UFO05513.5prime Sequence
1088 bp (956 high quality bases) assembled on 2009-07-15
> UFO05513.5prime
CAGTCGACATGGTATTATGCTCATTAAAATTAAGTTGGGCAATCATGGCT
GAGGAGACAATAATTCTCATTTTATTAGTGTTGGTTATGCTTGTGGGGTC
TTATTTGGCAGGGAGCATACCGATGCTGATGAAATTAAGCGAGGAAAAGC
TAAAATGTGTCACTGTGCTGGGAGCTGGATTGTTAGTGGGAACTGCTCTC
GTTGTTATTATTCCGGAGGGCATTCGATCATTGTATGTGGGGAGTGGCCA
ATCCCAAAAACGGACATCAGTTCCGGAGCAACCAGATTACTCACAGACCA
TTGGACTTTCTCTTGTGCTTGGATTTGTCTTCATGATGTTGGTGGACATC
TCTCAGCGGAAGAGTAATGTTGGAAGTAATAAAAAAAACAATGCCACACT
AACTCTTGGATTGGTTGTGCATGCCGCAGCTGATGGAGTTGCATTGGGAG
CAGCTGCCACCACTAGCCATCAAGACGTTGAGATAATTGTATTTTTAGCT
ATAATGCTTCATAAGGCACCAGCAGCATTTGGATTAGTGACATTCTTACT
GCACGAAAAAGTAGACAGACATCAAATTCGCAGACACCTAGTCTTATTTT
CCCTGTCGGCTCCCCTTATGACTATTTTAACGTATTTTGGGATCGGACAG
GAGCAGAAGGACACGTTAAATTCCGTGAATGCCACTGGTATAGCTATGCT
ATTCTCCGCTGGAACATTTTTGTACGTAGCAACTGTGCATGTTTTACCAG
AGCTTACCCAAGGGGGATTTACGAAAAGCGATCAGCATGATTATTGTTTG
CTAGAGGAATCTCGAGGTGTTGCTACGATGATATAAATGGAAGCAATAGT
ATTCAAGCACTAAAATATAGTGAATTGGTATTCTGATTTGCGGCGCACTG
CTACCCCTAATTATAACATTTGGACATATCACGCAAGCTTTCTAGACATT
CGTTTGGCGCCGCGGGCCCAGGTAGTGGTCATATCATAATCATATTCATA
ATCATAATCCAACTAGCTAGGAGATCTGTCATGACTAGTGCTGATTCCCA
CAATAAACGCCCGCGCACGGAGCGTTCGAACATTCGAT
UFO05513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip102B-RF | 2995 | CG2177-RF | 206..1127 | 9..928 | 4560 | 99.8 | Plus |
| Zip102B-RE | 2821 | CG2177-RE | 32..953 | 9..928 | 4560 | 99.8 | Plus |
| Zip102B-RB | 2870 | CG2177-RB | 213..1002 | 141..928 | 3900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 312798..313302 | 928..426 | 2425 | 99.6 | Minus |
| 4 | 1348131 | 4 | 313357..313644 | 429..142 | 1440 | 100 | Minus |
| 4 | 1348131 | 4 | 313747..313882 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:01 has no hits.
UFO05513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:43 Download gff for
UFO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RA | 27..953 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:43 Download gff for
UFO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2177-RE | 32..958 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:19 Download gff for
UFO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip102B-RE | 32..958 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:19 Download gff for
UFO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 312791..313298 | 430..933 | 99 | <- | Minus |
| 4 | 313357..313642 | 144..429 | 100 | <- | Minus |
| 4 | 313748..313882 | 9..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:43 Download gff for
UFO05513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 333417..333924 | 430..933 | 99 | <- | Minus |
| arm_4 | 333983..334268 | 144..429 | 100 | <- | Minus |
| arm_4 | 334374..334508 | 9..143 | 100 | | Minus |
