UFO05515.5prime Sequence
1095 bp (990 high quality bases) assembled on 2009-07-15
> UFO05515.5prime
CAGTCGACATGGACTTTCAGCGAAACGATGCTATGCTCATGGAAATTCTG
CAGGATCGGAAAACTATTACAGGTTTCCTGGACTCCATTTTCGGATTTCT
GCGACGCAACACCGACTTTTATCACACAAAACGCGATGAAGCGGATAAAA
TAGGCTTCCCCAAAGGCGTGAGGGATCAGATTCTATATGGCGCCATGCAG
CGCTACGATCCGGATTGCTTGCTACAATCCCTGACCGCGGAAGGCGGTGC
AGATGATGGAGAAACGGCTCCGCCTGCCGTCGAAGAAGTGGTCCTGGAAA
GCGAAGATGGTCCTCAGGACGAGGAAATGAAACCCATAGAGAGCCAGCCG
CCACAAAAAGGGAAGGAGCAGTCAAAGTTCTCCCCCAGCGACTACAAAAA
CGGAGATGTGTTCGAAACGCACTGCTGGTCACAAACCCTCAAGGATGTGG
AGGTGCAGGCTCTGCTTCCCAAGGATCATCAAACGGCGAAGAAGCTGCAC
ATTTCAATTCAGGCCCAGCACATCAAAGTGAGCAGCAAGCATAGCCCAGA
GACGATCATCCTCGAGGGAAACCTGAGCCAGCGGATTAAACACAAGGAGG
CGGTGTGGACAATTGATCAGAACCGATTGATCATAAGTTACGATAAAGCA
AAGGAGCTCTGGTGGGATCGGCTCTTCGAAGGTGATCCAGAAATCGATTC
CAAGAAGATTGAATGCGAACGCTATATAGATGATTTGCCGGAGGAAACCC
AGGCCACCATAGAAAAGCTTAGGGTCCAGCAGTTGGCAGCAGACAAGCAA
CAAAATGAAATTCAGACCTCAAGTCCCGACCAAGCTATAAACCTGGATCG
CCTGAAAGCTGCCTGGGATGCCGAAAGTTCGCCGTTTAAAGGACAGCCCT
TTGATCCTTCTATCGTAGATGAGTGCAGCTTTCTAGACCATTCGTTTGCG
CGCGGCCCAGGTAGTGTCATAATCATAATCATATCATATCATATCACACT
AGGCTAGAGATCTGTCATGACTAGTGCCTGATCTCACATAAAAACGCCGC
GCACGACGTCTGACAATCCGATGAATCTGAGGTCATTACTGATTA
UFO05515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31251-RA | 1060 | CG31251-RA | 71..979 | 9..917 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17684155..17684687 | 642..110 | 2665 | 100 | Minus |
| 3R | 32079331 | 3R | 17683821..17684096 | 917..642 | 1365 | 99.6 | Minus |
| 3R | 32079331 | 3R | 17684745..17684845 | 109..9 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:38:12 has no hits.
UFO05515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:46 Download gff for
UFO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31251-RA | 67..987 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:05 Download gff for
UFO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31251-RA | 71..989 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:14 Download gff for
UFO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31251-RA | 71..989 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:14 Download gff for
UFO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17683811..17684095 | 643..931 | 97 | <- | Minus |
| 3R | 17684155..17684687 | 110..642 | 100 | <- | Minus |
| 3R | 17684745..17684845 | 9..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:05 Download gff for
UFO05515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13509533..13509817 | 643..931 | 97 | <- | Minus |
| arm_3R | 13509877..13510409 | 110..642 | 100 | <- | Minus |
| arm_3R | 13510467..13510567 | 9..109 | 100 | | Minus |
