UFO05516.5prime Sequence
1062 bp (933 high quality bases) assembled on 2009-07-15
> UFO05516.5prime
CAGTCGACATGTCACGACAAGCCTCTCGTTTGGACGCCAAGAAAGTGAAC
TCGGAGTTCCTGACACTCACCTACGGAGCACTCGTCACCCAGATGCTGCG
CGACTTCGAGAACGCCGAGGACGTGAACAAGCAGCTGGAGCGAATCGGCT
ACAACATGGGCATGCGACTGATCGAGGACTTTCTGGCCAGGACATCGGCG
CCACGCTGCCTCGAGATGCGCGAGACGGCCGATCGCATCCAGCAGGCGTT
CCGCATCTACCTGAATATCCAGCCCACCATCTCGAACTGGTCGCCGGCCT
CCGATGAGTTCTCCCTGGTATTCGATAGCAATCCGCTGACGGAGTTCGTC
GAGCTGCCGCCTGACCTGACCAATCTGCGCTACAGTGCCATACTCAGCGG
CTGCATCCGCGGCGCCCTGGAGATGGTGCAGCTGGAGGTGCAGTGCTGGT
TCGTGCAGGATCAACTGAAGGGCGACAATGTGACGGAACTGCGCGTTAAG
TTCGTGCGGCGTCTAGAGGAGGTCATACCAGCTGGCGAGGATGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAGCCATCACA
AACGCATGATGAACCTGATCGCAGCGCATCAGCACTTGTCGCTTGCGTAT
ATATTTGCCATGTGAAACGGGGCGAGAGTGTCATATGCCACGTTAATCAA
CTGTGAACTCACCCAGGATGCTGAAACGAAAACATATTCTCATAACCTTT
AGAAAGCAAGTTCACGTAACACGCCCAATCTTGCAATTATTTTGTGAACT
GCGAATCGTCTT
UFO05516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bet3-RA | 1125 | CG3911-RA | 106..639 | 9..542 | 2670 | 100 | Plus |
| MTF-1-RF | 3182 | CG3743-RF | 2841..3182 | 459..118 | 1710 | 100 | Minus |
| MTF-1-RF | 3182 | CG3743-RF | 2671..2748 | 531..454 | 390 | 100 | Minus |
| Nf-YA-RA | 2055 | CG3891-RA | 106..144 | 9..47 | 195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9439149..9439561 | 459..47 | 2065 | 100 | Minus |
| 3L | 28110227 | 3L | 9438968..9439056 | 542..454 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 9442124..9442162 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:08 has no hits.
UFO05516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:47 Download gff for
UFO05516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3911-RA | 82..625 | 1..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:45 Download gff for
UFO05516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet3-RA | 96..639 | 1..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:23 Download gff for
UFO05516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bet3-RA | 96..639 | 1..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:23 Download gff for
UFO05516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9438968..9439051 | 459..542 | 100 | <- | Minus |
| 3L | 9439150..9439560 | 48..458 | 100 | <- | Minus |
| 3L | 9442124..9442172 | 1..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:45 Download gff for
UFO05516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9432068..9432151 | 459..542 | 100 | <- | Minus |
| arm_3L | 9432250..9432660 | 48..458 | 100 | <- | Minus |
| arm_3L | 9435224..9435272 | 1..47 | 91 | | Minus |
