UFO05517.5prime Sequence
1058 bp (962 high quality bases) assembled on 2009-07-15
> UFO05517.5prime
CAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCCACTCTCTT
GCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAGGAGGCCGG
CGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGACGAACTGA
AACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCGAGGAGATG
TCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATGGACCAGGT
GGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCTGGTAGAGC
TGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACCTAGGCGAG
AAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGATGAATACGC
GCCTCAGCATATCAGGGAGCTTCTTCAGATTGCAGCTTCCAATGCCGATG
GCGACTGCGATCGTCACGTGGAGCACTTCCTGAACGGAAAGACCGACGTG
CAGACTTTCCTCAACACGTACCAGTGGTCGAAGAAGATCAGTACCGAGCG
CAAGGCCAAAGAGGAGCGCCTGGGCACCCAGCTCAGTGCTCTGGAGCGGG
CCGGTATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCACTCATCGCAGTACTGTTGTATTCATTAGCATTCTGCCGACAT
GTAGCATCACAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCGCT
GCGTATAATATTTGCCATGTGAACGGGGCGAGAGTGTCGTATGTCCGTAT
TCAACTGGTGACTCACCCAGGAATGCTGAACGAAAACATTCTCATATCCT
AGAAGGCA
UFO05517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(r)-RF | 1294 | CG17828-RF | 269..868 | 9..608 | 3000 | 100 | Plus |
| mod(r)-RC | 1332 | CG17828-RC | 307..906 | 9..608 | 3000 | 100 | Plus |
| mod(r)-RA | 1343 | CG17828-RA | 318..917 | 9..608 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 621891..622151 | 9..269 | 1290 | 99.6 | Plus |
| X | 23542271 | X | 622433..622625 | 416..608 | 965 | 100 | Plus |
| X | 23542271 | X | 622207..622359 | 265..417 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:37 has no hits.
UFO05517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:48 Download gff for
UFO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RC | 293..907 | 1..616 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:18 Download gff for
UFO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RA | 310..924 | 1..616 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:32 Download gff for
UFO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RA | 310..924 | 1..616 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:32 Download gff for
UFO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 622434..622632 | 417..616 | 98 | == | Plus |
| X | 621883..622146 | 1..264 | 98 | -> | Plus |
| X | 622207..622358 | 265..416 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:18 Download gff for
UFO05517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 515916..516179 | 1..264 | 98 | -> | Plus |
| arm_X | 516240..516391 | 265..416 | 100 | -> | Plus |
| arm_X | 516467..516665 | 417..616 | 98 | == | Plus |
