Clone UFO05518 Report

Search the DGRC for UFO05518

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:55
Well:18
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG13001-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05518.5prime Sequence

655 bp (654 high quality bases) assembled on 2009-07-15

> UFO05518.5prime
CAGTCGACATGGCCACCAGCGAGATCTCGAGCTCCAATGAGCGGCACTAC
TACGCCAAACTGGAGGCCATCAAGGACATCAGGGACAAGACGCTGTCGCT
GGAGAAGCTCAAAGTGCGGATCATCAAGGAGGTGAAGCTGAGCGACGACG
AGGAGAAGTGCCTGGAGGAGTACCGCAAGGAGATGGAGCACCTGCTCGAG
GAGAAGATGTCGCACGTGGAAGAGCTGCGCCAGATCCACGCGGACATCAA
CGACATGGAGAACATCATCAAGCAGACGAAGGAGAACCAGACCCGCTCCT
TCGACATGGCCAACCGGGTGTACGAGGAGTACCTGGCCCTGAAGTACCAG
ATTGATCACATGCGCCGCGACTATCTCGGACTAAGCCCGCTGCGAGATCT
GCACGAGGAGGAGGGCAGTCCCATTTCGAAGGATCGCTTCCAGACCAACT
TCCTTAAGGTGGCCGCCCAGTCGGCGGCAGCAGCAGCTGCTGCAGCTGCG
GCGGCGGCCTCGGTTAATCAGAACTCGTCGTTGGCCCGTCCGCATGCCCG
GCATCCTCTGATGCCGGAGGCCACGGTCACCGCGCTGCCTTCTGGCGGCG
GACAGGGCGGCGTTGGTGGTGGCGGCGCTGCAGCGGTGGCGGAGGATCCT
GTTGG

UFO05518.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13001-RA 1786 CG13001-RA 290..930 9..648 3180 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16941942..16942582 648..9 3155 99.8 Minus
Blast to na_te.dros performed 2014-11-28 23:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 3682..3778 642..544 138 62.6 Minus
G5 4856 G5 G5_DM 4856bp 530..655 224..98 110 55.1 Minus

UFO05518.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:49 Download gff for UFO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 273..926 1..655 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:26 Download gff for UFO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 273..926 1..655 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:52 Download gff for UFO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13001-RA 282..935 1..655 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:52 Download gff for UFO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16941936..16942589 1..655 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:26 Download gff for UFO05518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16835969..16836622 1..655 98   Minus