UFO05522.5prime Sequence
1062 bp (934 high quality bases) assembled on 2009-07-15
> UFO05522.5prime
CAGTCGACATGGTACGCAGCCGTCGTAGTGTGTCCAAGGAGGATGCCGTC
TCTCTGCTCACAGACAGCGGCATATCGCTGTCTTCGCCGCCGGCGGCGAG
GGAATCCTCACCAGGCCCTACGCTTGCGATCAAAAGGAGGAAGAGCAGCT
TGGCAAGTCTGCGCGATGCTTGTGTGGACGAGGAGGAGGACGACGGCGGA
GAGCAGGACTCAAAGGATGATGATTACGTGCAACCGCAGCTTAAGAAGTC
TGCCCGAAAGGGCGAACCGGTGAAACGCAAGCACCATGTCTGCAGTCAAT
GCTCCAAAGAGTTCGGTGGCAAGACGGATCTGCAGCGCCACATGCTTATC
CACTCGGACGAACGACCGCACAAGTGCAAGGATTGTGGCAAGAGCTACCG
CCAGGCGGTCAACCTGAAAAATCATATCACCACCGCCCACGAGCATCGGA
AACAGTTCGTTTGTTCCCAGTGCCCAAAATCATTCGCCCTCAAGGAGCGC
CTGCGGCTCCACATGCGCCTCCACTCTGGCGAGAAGCCCTATCCTTGCGA
CCTCTGCGACAAAAAATTCGCCCGAGGAGGTCAACTGCAACAGCACATGG
TTTCTCACCACAAGACGAGTATCCAGCAGTTCAACTGCACTAAGTGCTCG
GCCAGCTTCTCAACCAACGCCAATTTACGGGTGCACATGGAGCGACACGA
GCAGGGCATGGAGCACCGGTGCAGCATCTGTGAGAACCAATTCGCCAACG
AGCTGGCCCTGCGAGCGCACATAAACCAGGAGCACCACAAGCTGACGCAA
TTTGAGTGCGAGATATGCCATAAGATGATCGAGCCGGACGAGGATTTGGG
CCACTCACATGCAGAGGCACACGCTGTAAGACCCACGTCTGCGAGGTGTG
CAACACATATTTCACCCAGAAAGCCAGTACATGTCATATGCGATGCACCA
CGGGAGAGCGCCCTATCATGTAGATCTGCAACAGAACTTTGCCCATCAGG
CGTACTAACTGCACATCGAAAGCATACGGGGAAACCCTTTCCCTGCCAGC
TTGCCAGACCAG
UFO05522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11247-RC | 2564 | CG11247-RC | 423..1480 | 9..1051 | 4795 | 97.8 | Plus |
| CG11247-RA | 2803 | CG11247-RA | 662..1719 | 9..1051 | 4795 | 97.8 | Plus |
| CG11247-RB | 2728 | CG11247-RB | 587..1644 | 9..1051 | 4795 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21726163..21726738 | 584..9 | 2880 | 100 | Minus |
| 3L | 28110227 | 3L | 21725612..21725950 | 922..585 | 1550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:42 has no hits.
UFO05522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:40 Download gff for
UFO05522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RC | 413..1485 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:12 Download gff for
UFO05522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 580..1652 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:27 Download gff for
UFO05522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11247-RB | 580..1652 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:27 Download gff for
UFO05522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21725555..21725950 | 585..973 | 97 | <- | Minus |
| 3L | 21726163..21726745 | 1..584 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:12 Download gff for
UFO05522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21718655..21719050 | 585..973 | 97 | <- | Minus |
| arm_3L | 21719263..21719845 | 1..584 | 99 | | Minus |
