UFO05523.5prime Sequence
1050 bp (929 high quality bases) assembled on 2009-07-15
> UFO05523.5prime
CAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGGAGATCGAA
GATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGATGAAAATCG
CAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACA
CGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTGCGATGCAG
CGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAGCATCTGCG
AGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATCCGATTACC
GGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCCTGCAAGCG
TCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGCATCCTGTA
CGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGCGGACCTGC
TGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAGGCAAGGTT
AAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGGCTTATCGA
TGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAGCTTGTGCC
GCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGAAGCTGCGC
ACTGCCAGCAACAACCAGATCAAGGAGGAGTCCGATACGTCCTCCAGCTC
CCGGAGCTCCACGAAGCGCAAGTCCAGACTGACTACGGGCCACAAGTACC
GGGTTATCCAGTGCACGGGCTACCTCAAGTCCTGACACCCATCAAGGACG
AGGACCAGGACGCCGACAGCGACGAGCAGACACGATCTATCCTGCCTTGT
GGCATTGGTCGCATTCCGCCACGTTCGCAACTCCACAGTACCCGCTCGCT
GGACATCACCGAACATACGGCACGTGCTCTTCATCTCGCGCCACTCGGCG
AGGCAGTCTGTCATAGACAGGTGCCACCCTCTGATGTCCTGCCTCAGGAA
TCCTCCGCACCAGCTTCTACGAGTACTCCACACGAAACTCCGCTGCGCCG
UFO05523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyc-RA | 1625 | CG8727-RA | 165..1230 | 9..1048 | 4660 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19814807..19815261 | 558..104 | 2275 | 100 | Minus |
| 3L | 28110227 | 3L | 19814340..19814736 | 946..559 | 1560 | 97 | Minus |
| 3L | 28110227 | 3L | 19815420..19815496 | 104..28 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:51 has no hits.
UFO05523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:41 Download gff for
UFO05523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1230 | 5..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:26 Download gff for
UFO05523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1230 | 5..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:46 Download gff for
UFO05523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyc-RA | 163..1230 | 5..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:46 Download gff for
UFO05523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19814340..19814736 | 559..946 | 97 | <- | Minus |
| 3L | 19814807..19815261 | 104..558 | 100 | <- | Minus |
| 3L | 19815421..19815495 | 29..103 | 100 | <- | Minus |
| 3L | 19815755..19815776 | 5..28 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:26 Download gff for
UFO05523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19807440..19807836 | 559..946 | 97 | <- | Minus |
| arm_3L | 19807907..19808361 | 104..558 | 100 | <- | Minus |
| arm_3L | 19808521..19808595 | 29..103 | 100 | <- | Minus |
| arm_3L | 19808855..19808876 | 5..28 | 91 | | Minus |
