UFO05524.5prime Sequence
1040 bp (930 high quality bases) assembled on 2009-07-15
> UFO05524.5prime
CAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGCACGACAGC
GTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGCTCCTCCAT
CGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGCCGCAGATG
CCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGTCCATGGGC
GGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCTTCGGGTGG
TCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCACCATGGCCA
TTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCTGTGATTTC
ATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCCTGGCAGAA
CTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAAGGTGCCCC
GCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGGACCCGCTG
GCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGGAAGCGCTA
CAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGTCTTTGGCA
CGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGCCAGTGCAC
TTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTGGTCCATAA
TCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGGACAAGAAGTTTAACT
TCTTTGCGAATGCCGAAGCATCCTTCTACCAGGGAAGTCAGTCGGGGGAC
AAGTTCGACCGGCTGCCCTTCATGAATCGCGGTCGAGGAGCGGATGTCCT
GATGCACTACCGCACAGCAGTGGCTCCGGCGAGAGTAGCGGGGGATCGAG
AGCAGCGTGCTCCAGTACAAAAGCCATACGCTCGATGTGCGACTGTGGCA
GTGCTGCGGGCATCCCGCCACAGGATACGCAAACGCTGTCCGCCGGCGGT
GTATGATCTCATGGTACATGACATGCGAACAAGGCAATGC
UFO05524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd59A-RA | 2228 | CG3668-RA | 341..1355 | 6..1001 | 4520 | 97.5 | Plus |
| croc-RA | 2347 | CG5069-RA | 490..773 | 258..541 | 355 | 75.4 | Plus |
| slp1-RA | 1425 | CG16738-RA | 598..702 | 392..496 | 225 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22869174..22869695 | 361..881 | 2515 | 99.2 | Plus |
| 2R | 25286936 | 2R | 22868499..22868854 | 6..361 | 1750 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21475707..21475990 | 541..258 | 340 | 74.6 | Minus |
| 3R | 32079331 | 3R | 25083736..25083880 | 409..553 | 215 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:55 has no hits.
UFO05524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:42 Download gff for
UFO05524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 1972..2993 | 1..1001 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:41 Download gff for
UFO05524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 334..1355 | 1..1001 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:15 Download gff for
UFO05524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd59A-RA | 334..1355 | 1..1001 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:15 Download gff for
UFO05524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22868492..22868854 | 1..361 | 98 | -> | Plus |
| 2R | 22869175..22869833 | 362..1001 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:41 Download gff for
UFO05524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18756015..18756377 | 1..361 | 98 | -> | Plus |
| arm_2R | 18756698..18757356 | 362..1001 | 96 | | Plus |
