UFO05525.5prime Sequence
939 bp (796 high quality bases) assembled on 2009-07-15
> UFO05525.5prime
CAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGGACGATGAT
CAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGTTCTGGCGC
TGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCACCTCCTGCT
GTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTACCACCCACT
GTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTCAAGTTCAA
AATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGTACAAACAC
CCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAGCGGAATGC
ATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATATGTTAGCCC
AGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGTGGCCGCCC
AACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCGAGGAGAAA
CTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGAAGTCGCAT
CTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAAAAGCAGTC
ATCTGAACGCCCACCAGAGGGTTCACACCGGCGAGCGACCCTTTATCTGC
AAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAGTTGTCCCG
ACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAGCGTCTGCA
GAGAAATTCATGAGAGCGATCACCTGTCGAGCACGTCAAACGGCACACAG
ACAAGCGACGGAGTGATCGACATGTCTCCCTGCAACAACAACACATCAGC
TCGTAGCGCTCCTCTGCATGCCTCCCTCCATTTGCAGCGAAAGCACCGGC
GGATCAGGCTAGTCCTCGCCATCAGTCCGCCAGCTGCAG
UFO05525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbt-RC | 2361 | CG4427-RC | 777..1728 | 9..935 | 4060 | 96.6 | Plus |
| cbt-RB | 3243 | CG4427-RB | 1659..2610 | 9..935 | 4060 | 96.6 | Plus |
| cbt-RA | 2041 | CG4427-RA | 457..1408 | 9..935 | 4060 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 477238..478030 | 797..9 | 3710 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:35 has no hits.
UFO05525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:54 Download gff for
UFO05525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RB | 1017..1929 | 9..902 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:52 Download gff for
UFO05525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 457..1369 | 9..902 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:21 Download gff for
UFO05525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbt-RA | 457..1369 | 9..902 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:21 Download gff for
UFO05525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 477176..478030 | 9..851 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:52 Download gff for
UFO05525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 477176..478030 | 9..851 | 98 | | Minus |
