UFO05526.5prime Sequence
1097 bp (956 high quality bases) assembled on 2009-07-15
> UFO05526.5prime
CAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGGAAATCGAG
ATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAGCGCGTGGA
GGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTTCTCCGGCA
AGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGCAAGGTGGA
TCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCAATCCTAAC
ACCTTGTGTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATAT
GTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGAGCGATGAAACG
TTTCAGTTTGCTCATGGAAACGTGTAACAGGTGACACTATCCCATATCAC
CAGCTCACGTCTTCATGCATACGAAATTCGATGAGCATTCATCAGCGGCA
GATGTGATAACGCGATAACTTGGTGCTTATTTTCTTTACGTCTTTAAAAG
CGTAATATCCAGCTGACGTTGTTATAGTACTGAGCACCTGACTGAAATGC
TCAAAGTTCTTACATGCATGGGATATCACGGGTTCAGATTTTTCCCT
UFO05526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd8-RB | 612 | CG10679-RB | 123..374 | 9..260 | 1260 | 100 | Plus |
| Nedd8-RA | 471 | CG10679-RA | 123..374 | 9..260 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18951406..18951539 | 158..25 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 18951244..18951346 | 260..158 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:45 has no hits.
UFO05526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:56 Download gff for
UFO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 1..255 | 9..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:58 Download gff for
UFO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 1..267 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:26 Download gff for
UFO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd8-RA | 115..379 | 1..267 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:26 Download gff for
UFO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18951244..18951346 | 158..260 | 100 | <- | Minus |
| 2L | 18951407..18951537 | 27..157 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:58 Download gff for
UFO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18951407..18951537 | 27..157 | 100 | <- | Minus |
| arm_2L | 18951244..18951346 | 158..260 | 100 | <- | Minus |
