UFO05527.5prime Sequence
1100 bp (981 high quality bases) assembled on 2009-07-15
> UFO05527.5prime
CAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCCGCACCCTG
AAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTGCGCATTTT
CAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGCTCGGGACT
TTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCGAGGTCCAG
GTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGCTGCTACTT
CGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAATCGGAACG
ACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGGAGCAACTG
GACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCCAACTTTGG
CTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCAGGTGCCCT
GTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGATCTTGTTC
GCACCCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGG
CGAGAGTGTCATATGCCACGTTTAAATCAAACTGGTGAACTCACCAGGAT
GCTGAGACGAAAACATATCTCAATAACCCTTTAGAATAGCAGTTTCACGT
ACACGCCACATCTGCGAATATATGTGTAGAACTGCGAATCGTCTTGTATC
ACTCGAGCGATGAAACGTTCAGTTTGCTATGAACCGGTTACAGGGTGTAA
UFO05527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS25-RA | 641 | CG14413-RA | 90..590 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14582498..14582694 | 341..145 | 985 | 100 | Minus |
| X | 23542271 | X | 14582187..14582356 | 509..340 | 850 | 100 | Minus |
| X | 23542271 | X | 14582756..14582893 | 146..9 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:04 has no hits.
UFO05527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:58 Download gff for
UFO05527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS25-RA | 1..504 | 9..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:34 Download gff for
UFO05527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS25-RA | 81..590 | 1..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:54 Download gff for
UFO05527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS25-RA | 81..590 | 1..509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:54 Download gff for
UFO05527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14582187..14582355 | 341..509 | 100 | <- | Minus |
| X | 14582499..14582693 | 146..340 | 100 | <- | Minus |
| X | 14582757..14582901 | 1..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:34 Download gff for
UFO05527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14476220..14476388 | 341..509 | 100 | <- | Minus |
| arm_X | 14476532..14476726 | 146..340 | 100 | <- | Minus |
| arm_X | 14476790..14476934 | 1..145 | 97 | | Minus |
