UFO05528.5prime Sequence
1082 bp (954 high quality bases) assembled on 2009-07-15
> UFO05528.5prime
CAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGCTAATGACG
ATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGCCAGACCCA
GGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGAGCCCATCT
GGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGGTCACCGCG
GCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGACCAGCGACC
GCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCTGGTGGAGT
GCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGCTGAACGTT
GGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAACAAGATGGC
CATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGGCATCTCCT
CGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCATCAGTCGC
CAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATA
TTTGCCATGGTGAACGGGGGGCGAGAGTGTCCATATGTCACGTTAATCAA
ACTGGTGAACTCACCCAGGATGCTGAACGAAAACATATTCTCAATAATCC
TTTAGGATAGCCAGCTTCACCGTACCCGCCCAATCTGCATATGTGTAGAA
CTGCGAATGTCTGATTCATCGAGCCGATGAAA
UFO05528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp19c-RC | 789 | CG15457-RC | 11..535 | 9..533 | 2625 | 100 | Plus |
| Obp19c-RA | 978 | CG15457-RA | 200..724 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20418451..20418765 | 323..9 | 1575 | 100 | Minus |
| X | 23542271 | X | 20418175..20418385 | 533..323 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:56 has no hits.
UFO05528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:01 Download gff for
UFO05528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19c-RA | 192..724 | 1..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:03 Download gff for
UFO05528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19c-RA | 192..724 | 1..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:31 Download gff for
UFO05528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp19c-RA | 192..724 | 1..533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:31 Download gff for
UFO05528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20418175..20418384 | 324..533 | 100 | <- | Minus |
| X | 20418451..20418773 | 1..323 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:03 Download gff for
UFO05528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20289202..20289411 | 324..533 | 100 | <- | Minus |
| arm_X | 20289478..20289800 | 1..323 | 98 | | Minus |
