UFO05530.5prime Sequence
1138 bp (1013 high quality bases) assembled on 2009-07-15
> UFO05530.5prime
CAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATATCAAGATA
TTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGTTATGTGTG
CATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTACATGATGA
GTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATATGCTCGTC
CTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCGGATCACGA
CAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTACGATTTAC
TGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGGTGAACAAG
GTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATGCTCACATC
CATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGTCCTGCCAT
TTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGTACTATGAG
ATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGTTGCATGTA
CATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGGCATTGTGA
GGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTAAGCATCCG
TACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATAGCCTGCAT
ACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAACGAGCTGA
CCACCATGATGTTCCTATTCGAACTGATGGCCTTTTCGGCGCTGCTCTGT
GCGCTGCTCTTTATGCTGATTATCGTCAGCGGCACCAGTCAGCTGATATT
TGTTTGCATGTACATTAACATGATTCTGGCCCAAATACTGGCCCTCTATT
GGTATGCAAATGAGTTAAGGACAGAATCTGGCGGTGGCCACCGCAGCCTA
CGAAACGGAGTGTTCACCTTCGACGTTCCACTGCCCAAAAACATCCTGTT
CATGATGATGAGGGCACAGCCGGCCACCTGCATACCACTGGGCCAATATA
CGCCCCCACTCACTTGGAACTGTTCCAAAACTACTGAACCCAACCCTAAT
ACATTTTTATCTGTTCTCAGCGAGTCTACGAGCAAGCT
UFO05530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or49b-RA | 1739 | CG17584-RA | 474..1597 | 8..1130 | 5215 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12843138..12843571 | 8..441 | 2170 | 100 | Plus |
| 2R | 25286936 | 2R | 12843674..12844060 | 440..826 | 1935 | 100 | Plus |
| 2R | 25286936 | 2R | 12844121..12844319 | 825..1020 | 850 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:59 has no hits.
UFO05530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:03 Download gff for
UFO05530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or49b-RA | 470..1597 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:24 Download gff for
UFO05530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or49b-RA | 470..1597 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:12 Download gff for
UFO05530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or49b-RA | 470..1597 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:12 Download gff for
UFO05530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12843134..12843571 | 1..441 | 99 | -> | Plus |
| 2R | 12843676..12844058 | 442..824 | 100 | -> | Plus |
| 2R | 12844121..12844330 | 825..1031 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:24 Download gff for
UFO05530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8730639..8731076 | 1..441 | 99 | -> | Plus |
| arm_2R | 8731181..8731563 | 442..824 | 100 | -> | Plus |
| arm_2R | 8731626..8731835 | 825..1031 | 96 | -> | Plus |
