UFO05531.5prime Sequence
1127 bp (998 high quality bases) assembled on 2009-07-15
> UFO05531.5prime
CAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCTGCCGCTCT
GTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAGAAGACCAT
TATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCTGAAAATCA
ATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTGCTTTGTGG
GAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGCAAGGACGA
CAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAATCAGCGCC
TGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGTACTATTAT
CCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTACAAGAAGAT
CGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCAGACCTACA
GCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGGCCACCGTT
TCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCCAATGTGGC
ACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGAGGAAAACT
GGGCTGGTTGCCAGGAGTTCCGCAAATACTTCGATAACGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCAACTCATCGCAGT
ACTGTTGTATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGACCTGAATCGCCAGCGGCATCAGCACCTTGTCGGCTTGGCGTA
TAATATTTGGCCCATGGTGAAACGGGGGCGAGAGTTGTTCCATATTTGGG
CCACGTTTATTCAACCTGGTGACTCACTCAGGGATGGCGTGAAACGAAAA
CAATTCTCATAACCTTTAGGGAATGGC
UFO05531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD10-RB | 876 | CG18548-RB | 107..736 | 9..638 | 3150 | 100 | Plus |
| GstD10-RA | 852 | CG18548-RA | 83..712 | 9..638 | 3150 | 100 | Plus |
| GstD1-RB | 843 | CG10045-RB | 211..714 | 131..634 | 655 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12364916..12365545 | 638..9 | 3150 | 100 | Minus |
| 3R | 32079331 | 3R | 12367946..12368449 | 634..131 | 645 | 75.2 | Minus |
| 3R | 32079331 | 3R | 12373217..12373674 | 147..604 | 400 | 73.5 | Plus |
| 3R | 32079331 | 3R | 12375900..12376354 | 148..602 | 385 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12374268..12374743 | 127..602 | 355 | 71.6 | Plus |
| 3R | 32079331 | 3R | 12372134..12372338 | 148..352 | 320 | 77.1 | Plus |
| 3R | 32079331 | 3R | 12380504..12380627 | 480..603 | 245 | 79.8 | Plus |
| 3R | 32079331 | 3R | 12366573..12366775 | 333..131 | 220 | 73.9 | Minus |
| 3R | 32079331 | 3R | 12377316..12377485 | 156..325 | 205 | 74.7 | Plus |
| 3R | 32079331 | 3R | 12378699..12378871 | 156..325 | 200 | 75.7 | Plus |
| 3R | 32079331 | 3R | 12380142..12380359 | 118..335 | 190 | 72.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:12:45 has no hits.
UFO05531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:05 Download gff for
UFO05531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD10-RA | 60..699 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:17 Download gff for
UFO05531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD10-RA | 60..699 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:23 Download gff for
UFO05531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD10-RA | 77..716 | 1..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:23 Download gff for
UFO05531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12364912..12365551 | 1..642 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:17 Download gff for
UFO05531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8190634..8191273 | 1..642 | 99 | | Minus |
