UFO05534.5prime Sequence
1065 bp (886 high quality bases) assembled on 2009-07-15
> UFO05534.5prime
CAGTCGACATGGGAACTCGGTACGACAGCTTCGCCAAATACTACTATCCC
CTTTTCCACACTGGAAAGCCCGGATCTGATGAGGACTTTAAGAAGATCGA
GAGCTCCTTCGAGTATCTGAATATCTTCCTGGAGGGCCAGAACTACGTGG
CCGGTGACCACCTCACAGTGGCTGATATTGCCATCCTCTCCACCGTTTCC
ACTTTCGAAATCTTTGATTTCGACCTCAACAAGTACCCGAATGTGGCCAG
GTGGTATGCCAACGCCAAGAAGGTGACTCCCGGATGGGAAGAGAACTGGA
AAGGTGCCGTGGAACTGAAGTGCACTAGACGGATTCCCCCAGCCCTTCTG
ACGATGGATCTCTATAACATGTCTGGTTCCCCGAGCACCCGGGCCGTTAT
GATGACCGCCAAAGCTGTGGGAGTCGAGTTCAACTCGATACAAGTTAATA
CCTTTGTGGGGGAACAACTGGAGCCATGGTTTGTAAAGATAAACCCTCAG
CACACGATTCCAACCCTGGTGGACAATTTATTCGTTATTTGGGAAACTCG
GGCCATTGTTGTCTACCTAGTGGAGCAGTACGGTAAGGATGATTCTCTGT
ACCCGAAGGATCCCCAGAAGCAAGCGCTGATCAACCAGCGTCTGTACTTC
GATATGGGCACCCTGTACGATGGCATTGCCAAGTACTTTTTCCCACTGCT
TCGGACGGGCAAACCCGGAACTCACGAGAATCTTGAGAAACTGAACGCTG
CCTTCGATCTTCTCAACAACTTCCTGGATGGCCAGGATTACGTGGCCGGC
AATCAGCTTTCAGTGCAGATATCGTTATATTGGCCACCGTTTCCACAACC
GAGATGGTTGACTTCGATTTAAAGAAGTTTCCCAACGTGACAGATGGTAT
AAGACCGCCCAAAAGTTACGCCGGGTGGGACGAGACTTGCAGATCAAAGC
GCCAAAATTCTAGCCGAACTTATAGAAGTAGCAGCTTTCTAGACATCGTT
GGCCGCGCGGCCCAGTATGGTCATATCTAATCATAATCATAATCATAATC
CAACTAGCTAGGAAT
UFO05534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD6-RA | 780 | CG4423-RA | 10..671 | 319..968 | 2995 | 97.7 | Plus |
| GstD5-RA | 840 | CG12242-RA | 327..643 | 4..320 | 1570 | 99.7 | Plus |
| GstD2-RA | 734 | CG4181-RA | 323..618 | 4..299 | 745 | 83.4 | Plus |
| GstD5-RA | 840 | CG12242-RA | 177..525 | 499..846 | 325 | 73.8 | Plus |
| GstD6-RA | 780 | CG4423-RA | 442..633 | 106..297 | 210 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12377137..12377747 | 319..926 | 2860 | 99 | Plus |
| 3R | 32079331 | 3R | 12376059..12376375 | 4..320 | 1570 | 99.7 | Plus |
| 3R | 32079331 | 3R | 12372293..12372588 | 4..299 | 745 | 83.4 | Plus |
| 3R | 32079331 | 3R | 12372102..12372331 | 458..687 | 415 | 78.7 | Plus |
| 3R | 32079331 | 3R | 12374570..12374749 | 126..305 | 405 | 81.7 | Plus |
| 3R | 32079331 | 3R | 12378659..12379051 | 458..846 | 395 | 74.6 | Plus |
| 3R | 32079331 | 3R | 12367978..12368196 | 299..81 | 390 | 78.5 | Minus |
| 3R | 32079331 | 3R | 12374297..12374464 | 498..665 | 300 | 78.6 | Plus |
| 3R | 32079331 | 3R | 12375909..12376097 | 499..687 | 300 | 77.2 | Plus |
| 3R | 32079331 | 3R | 12380141..12380348 | 459..666 | 260 | 75 | Plus |
| 3R | 32079331 | 3R | 12380452..12380633 | 125..306 | 250 | 75.8 | Plus |
| 3R | 32079331 | 3R | 12373499..12373672 | 126..299 | 240 | 75.9 | Plus |
| 3R | 32079331 | 3R | 12368235..12368436 | 687..486 | 230 | 74.3 | Minus |
| 3R | 32079331 | 3R | 12377569..12377760 | 106..297 | 210 | 74 | Plus |
| 3R | 32079331 | 3R | 12365229..12365398 | 667..498 | 205 | 74.7 | Minus |
| 3R | 32079331 | 3R | 12378974..12379103 | 125..254 | 200 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:20 has no hits.
UFO05534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:52 Download gff for
UFO05534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD6-RA | 1..633 | 354..972 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:32 Download gff for
UFO05534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD6-RA | 1..633 | 354..972 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:12:00 Download gff for
UFO05534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD6-RA | 10..677 | 319..972 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:12:00 Download gff for
UFO05534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12376057..12376378 | 1..320 | 98 | -> | Plus |
| 3R | 12377139..12377804 | 321..972 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:32 Download gff for
UFO05534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8201779..8202100 | 1..320 | 98 | -> | Plus |
| arm_3R | 8202861..8203526 | 321..972 | 97 | | Plus |
