UFO05536.5prime Sequence
1042 bp (928 high quality bases) assembled on 2009-07-15
> UFO05536.5prime
CAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATAAGTCCTCC
AGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTCGACGGTGA
CCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCGTCGGCTAC
CCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACCTGGCTGCT
CTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCAACCACACT
TTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTACAGCCGGTG
CCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGCCCCTGCGC
CTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCCGTCTACCA
TTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAACTGATGCAG
ATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGGGCTGGCTG
CTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGACTGGATCT
CTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAAGCACTATT
ATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTATTCCAATG
GTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTTGTGGCCACCATGT
TCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAGCGCGGCC
CATAAATTCGGAAATCGCCCATACGACAAGACCATGAATCCTACCCAGAA
TGCCTTTGTATCGGCCTTCACCTTTGGCGAGGGTGCACACTACCATCACG
CGTTTCGTGGACTACAGACGGCCGATGGGTTGCTACTCCCTGATATACGA
CGCTTCATCGACTTGTCGCAAGATCGCTGGACTACGACTGAGACGTGCTC
CGACGTGATCAGCGACGGTGCTCCGCACTGCGACGTAGCCACGACTGTGG
GGCTGGGCGATAAGACTGACACCGGAGGATGCAGACTGCTCT
UFO05536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Desat2-RA | 1357 | CG5925-RA | 170..1225 | 5..1032 | 4500 | 96.9 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 447..922 | 285..761 | 875 | 79.5 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 491..966 | 285..761 | 875 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12436733..12437071 | 255..593 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 12436417..12436667 | 5..255 | 1240 | 99.6 | Plus |
| 3R | 32079331 | 3R | 12437189..12437375 | 593..780 | 890 | 99.5 | Plus |
| 3R | 32079331 | 3R | 12446007..12446308 | 285..586 | 865 | 85.8 | Plus |
| 3L | 28110227 | 3L | 11023789..11023960 | 283..454 | 275 | 77.3 | Plus |
| 3R | 32079331 | 3R | 12437444..12437497 | 780..833 | 270 | 100 | Plus |
| 3R | 32079331 | 3R | 30186709..30186831 | 499..377 | 270 | 81.3 | Minus |
| 3R | 32079331 | 3R | 12446467..12446562 | 685..780 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:40:47 has no hits.
UFO05536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:25:53 Download gff for
UFO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| desat2-RA | 164..1225 | 1..1032 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:24 Download gff for
UFO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| desat2-RA | 164..1225 | 1..1032 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:40 Download gff for
UFO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Desat2-RA | 164..1225 | 1..1032 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:40 Download gff for
UFO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12436411..12436667 | 1..255 | 98 | -> | Plus |
| 3R | 12436734..12437070 | 256..592 | 100 | -> | Plus |
| 3R | 12437189..12437374 | 593..779 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:24 Download gff for
UFO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8262133..8262389 | 1..255 | 98 | -> | Plus |
| arm_3R | 8262456..8262792 | 256..592 | 100 | -> | Plus |
| arm_3R | 8262911..8263096 | 593..779 | 99 | -> | Plus |
