UFO05539.5prime Sequence
1070 bp (937 high quality bases) assembled on 2009-07-15
> UFO05539.5prime
CAGTCGACATGAACCAGATTTTATTATGCTCTCCAATTTTACTGCTGCTT
TTTACAGTGGCAAGCTGCGATAGTGAGCAACAACTCGATTCAGCTATGCA
CCTGAAAAGTGATTCTACGAAAAGTGCATCTCTGAAAAATGTTGCTCCCA
AGAATGATGAGACACAGGCCAAAATAGCCAAAGATGATGTAGCTCTGAAA
GATGCGAAAAAGGGCGATTATATAATGGATATCGATATTTCTGATTTGCC
GCTGGATGATTATCCAATCAATAGGTCCAAATCACTAAAAAGCTCTTCCA
TTGACTTGAATAATATTCCTTTCAATAAAGGACTAGATGATTTCCCGGCA
AAAGAAAAAAATCAAGGATCCAATCAAAGTGCGCTCAAGGCCCTGCAACA
GAGGTTACTAACGGAGCAGAACAATAGTTTACTTCTCCGGAACCATTCCA
TATACTTGATGAAAGAAATAGAGGCCAGAAAAACGGATATTATCAAAGTA
CGACAGTTAAACCTCGATTTAGAGCTCGAGCTAAATACTGTGAACCGCAG
ACTTTTGGAATTGAATGGGCAACTGCAAAACACTCGAAAGTCCACAAAGC
CGTGTAAGAAACGTTCTAGTAAGGATAGCGCCCCACCTGCCGCCAATCAG
TTTCAGGAAGCCAACGTCAGGAACACTTACCGTAACAAATATCTAACACT
TCTGAAAGAACTTAGTCAGAAGATCAATAACGAAATCGCGAAAGTCGCTA
CCGATGTACCCACGGAGACAAATCCTTCCCAAGGAATCTACCAACACTTG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATAA
TCATATCATATCATATCATATCACACTAGCCTAGAGATCCTGTCATGACT
AGTGCTGATCTCACAATAAAAACGCCGCGCACGAGCGTCTGACATCAGAT
GAGTCTGAGTCATACTGATCTATCACAGGAGTCAGCGAGCTCGAATCAAT
ACGCCCGCCTGCCACTCATCGCAGTACTGTTGTATCATAGCATTCGCGAC
ATGGAAGCATCAACGCATGA
UFO05539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Aa-RA | 958 | CG8982-RA | 21..817 | 4..799 | 3945 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5893024..5893786 | 799..38 | 3750 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:07 has no hits.
UFO05539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:14 Download gff for
UFO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 19..825 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:04 Download gff for
UFO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 19..825 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:34 Download gff for
UFO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Aa-RA | 19..825 | 1..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:34 Download gff for
UFO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5893016..5893781 | 43..807 | 99 | <- | Minus |
| 2L | 5893838..5893878 | 1..42 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:04 Download gff for
UFO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5893016..5893781 | 43..807 | 99 | <- | Minus |
| arm_2L | 5893838..5893878 | 1..42 | 92 | | Minus |
