UFO05542.5prime Sequence
1135 bp (1011 high quality bases) assembled on 2009-07-15
> UFO05542.5prime
CAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTCAATTGACA
TGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTCGATGCCCT
TGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGAAGTTTGGA
AAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATCAGGACACC
GAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAGGTTAGGAC
TTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCGGAGCTTCG
ATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCCACGTCATT
CGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACCCATCGCAA
CAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGTGCTGGCTC
AGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCGCCAGAAGG
CTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAGTGTGTGCC
CAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGGACTCTTCC
CTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCAAGGATCAA
GATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTGTATGTCCT
GACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGACATGGTTC
GCTTGGGCGCCCGCCAGTTGAACGAGACCAGCGCGACCCAGCAGACATCA
AGATCCTCATCATCGTGCTGCATCCGAAGTACAGATCCTCGGCATATTAC
CACGATATTGCCCTGCTCAAGCTGACCAGAAGGTCAAGTTCTCGGAGCAG
TGCGTCCTGCTTGCCTGTGGCAACTGCCGGAGCTCCAGATACCCACTGTG
GTGGCCGCCGGTTGGGGACGCACCGAGTTCCTGGGCGCCAAATCGAATGC
CCTGGCGCCAGGTGAACTTGGACGTAGTCCCACAAATGACCTGCAGCAAA
TCTATCGCAAGAAGCGACGTCTGCCAGGAATCATCGAAGGGGCAGTTCTG
TGCGGGATTTTGCAAGCGCAGAACCTGCCAGGGGG
UFO05542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snk-RB | 1434 | CG7996-RB | 93..1203 | 9..1113 | 5265 | 98.7 | Plus |
| snk-RA | 1403 | CG7996-RA | 62..1172 | 9..1113 | 5265 | 98.7 | Plus |
| snk-RC | 1399 | CG7996-RC | 62..1168 | 9..1113 | 5195 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13041158..13041539 | 468..87 | 1910 | 100 | Minus |
| 3R | 32079331 | 3R | 13040402..13040786 | 1108..729 | 1480 | 96.4 | Minus |
| 3R | 32079331 | 3R | 13040840..13041101 | 730..469 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 13041603..13041681 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:10:09 has no hits.
UFO05542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:16 Download gff for
UFO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snk-RB | 85..1208 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:32 Download gff for
UFO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snk-RA | 54..1177 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:57 Download gff for
UFO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snk-RA | 54..1177 | 1..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:57 Download gff for
UFO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13040391..13040784 | 731..1119 | 95 | <- | Minus |
| 3R | 13040840..13041101 | 469..730 | 100 | <- | Minus |
| 3R | 13041158..13041538 | 88..468 | 100 | <- | Minus |
| 3R | 13041603..13041686 | 1..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:32 Download gff for
UFO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8866113..8866506 | 731..1119 | 95 | <- | Minus |
| arm_3R | 8866562..8866823 | 469..730 | 100 | <- | Minus |
| arm_3R | 8866880..8867260 | 88..468 | 100 | <- | Minus |
| arm_3R | 8867325..8867408 | 1..87 | 95 | | Minus |
