UFO05543.5prime Sequence
1093 bp (974 high quality bases) assembled on 2009-07-15
> UFO05543.5prime
CAGTCGACATGACTGATGTGGAGCCATCGCCCTACGGCGACTGCAAATTC
GTCGCTCGAGTGGAGCACATCAAGACCTTCATCCAGGCCATCAAGTCAAT
CTGCTTTAATGATTATGGGATGGTGCAAGTCTCCGAAGATGGTCTGCGCA
TCACCGTGGAGCAGGGCAAGTCCATCCAGGCAACGCTTTTCATGCCGCCG
GGTGCCTTCATGGAGTTCCGTGTGCAGGACTTCCAGTGCTTCGGTGTGAA
AATGAATGTGCTGTCCGAGTGTCTCAGTCTCTTCGGATCCGCCGATTGCA
GCCTGCGAATGATGTACAGGGATAAGGGCGATCCCCTGAAGATAATTCTG
TATCCGCACGACGACGATGATGTGAGCACGGAGTGCGCCATCAAAACCAT
GGACTGCGATGAGCCCATTGACTACGATCAGAATCTGAAGGATCCGGATC
TTAATGTTATTTTCGTACGCGGACCGAACCTATCGAAGGTGTTCAATGAG
CTGGAGAAGTCCGCGGAGGAGTTCGAGTTCGTGACATCGCCGAACCGCCC
GCACTTTAAGATCACCACAGTGGGGATCATGCAGGCGGTGTTCAGCGTCG
AAGTGGCAAAGACGAGTCCCATGATGATGATGTTTAACTGCAAACAGACG
GTGGTGGCTCGCTACAAGAGCCAGCAGATCCGCATGACCAACAAGGCGAT
GCAGTCGGCCACCAAGGTGGCCATTAAAACGAACTCCGTTGGCCTCCTAG
AACTGCATCTGGTAATGCAGGGCGATAGCCAGGAGGAGATATTCATTCAG
TTCTTCATAATTCCTTTGCTCAACACTGATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAATCATATCATAAT
CATAATCACACTAGCCTAGAGATCTGTCATGACTAGTGCTTGATTCTCAC
ATAAAAACGCCGGCGGCACGAGCGTTCTGAACAATCAGATGGAGTTCTGA
GTCATTTACTGATCTATCAACAGGAGTCAGCGAGCTCGAATCATACGCCC
CGCCTGCCCTCATCCCAGATATTGTTGTAATCATTAAGGCATT
UFO05543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 613..1434 | 9..830 | 4110 | 100 | Plus |
| CG34314-RA | 1484 | CG34314-RA | 613..1434 | 9..830 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573486..2574202 | 830..114 | 3585 | 100 | Minus |
| 2L | 23513712 | 2L | 2574276..2574380 | 113..9 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:41 has no hits.
UFO05543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:18 Download gff for
UFO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 641..1465 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:27 Download gff for
UFO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 613..1437 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:13 Download gff for
UFO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 613..1437 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:13 Download gff for
UFO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2574276..2574380 | 9..113 | 100 | | Minus |
| 2L | 2573482..2574202 | 114..834 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:27 Download gff for
UFO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573482..2574202 | 114..834 | 99 | <- | Minus |
| arm_2L | 2574276..2574380 | 9..113 | 100 | | Minus |
