UFO05547.5prime Sequence
1017 bp (888 high quality bases) assembled on 2009-07-15
> UFO05547.5prime
CAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCTTTTTGGCT
TTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAACTCGATCA
CTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCTAATGATCG
AGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTGATTTTCAG
CCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGGGTGGCCCA
TCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCTCGTACAAA
CCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCAAGTTTGAT
AGCTTGAGGTGCTTTGATGAGGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAAATCAAA
CTGGTGAAACTCACCCAGGATTGCTGAGACGAAAAACATATCTCAATAAA
CCCTTTAGGAATAGCAGTTTCACCGTACACGCCACATCTGCGAATATATG
TGTAGAACTGCGAAATCGTCTGGTTCACTCAGAGCGATGAAACGTTCAGT
TGCTCATGGAACGGTTACCAGGGTGAACACTATCCCATATCACAGCTCAC
GCTCTTGCTACGAATCG
UFO05547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp53C14a-RB | 705 | CG8626-RB | 44..406 | 9..371 | 1815 | 100 | Plus |
| Acp53C14a-RA | 479 | CG8626-RA | 44..406 | 9..371 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16748133..16748453 | 371..51 | 1605 | 100 | Minus |
| 2R | 25286936 | 2R | 16748506..16748547 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 61..33 | 109 | 86.2 | Minus |
UFO05547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:11 Download gff for
UFO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14a-RA | 26..392 | 9..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:00 Download gff for
UFO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14a-RA | 26..392 | 9..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:54 Download gff for
UFO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14a-RA | 44..410 | 9..376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:54 Download gff for
UFO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16748133..16748453 | 51..371 | 100 | <- | Minus |
| 2R | 16748506..16748547 | 9..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:00 Download gff for
UFO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12635638..12635958 | 51..371 | 100 | <- | Minus |
| arm_2R | 12636011..12636052 | 9..50 | 100 | | Minus |
