UFO05548.5prime Sequence
979 bp (887 high quality bases) assembled on 2009-07-15
> UFO05548.5prime
CAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTCTGTGCCTG
AGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGCCATGGATA
TGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTATGGCCACC
ATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACCTCGAACAC
GCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGATGAACATGT
GGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGTGAATGACT
TCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATGGTGACACC
GTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATCCGCACCGT
GGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGTCCACAAGA
CCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACTACGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGTATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGACCTGATCGCAGCGGCATCAGCACTTGTCGCTTGC
GTATATATTTGCCATGTGAAACGGGGCGAGAGTGTCATATGCACGTTAAA
TCAAACTGGTGAACTCACCAGGATGCTGAACGAAAACATATCTCATTATC
GTAGAATAGCAGTTCACGGTACGCCAATC
UFO05548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr66Cb-RA | 1001 | CG7076-RA | 66..551 | 9..494 | 2430 | 100 | Plus |
| Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 281..453 | 445 | 83.8 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 281..453 | 445 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8337587..8337829 | 19..261 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 8337912..8338145 | 261..494 | 1170 | 100 | Plus |
| 3L | 28110227 | 3L | 1840995..1841167 | 453..281 | 445 | 83.8 | Minus |
| 3L | 28110227 | 3L | 8326839..8326933 | 360..454 | 325 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:10 has no hits.
UFO05548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:12 Download gff for
UFO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr66Cb-RA | 66..561 | 9..506 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:39 Download gff for
UFO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr66Cb-RA | 66..561 | 9..506 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:00 Download gff for
UFO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr66Cb-RA | 66..561 | 9..506 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:00 Download gff for
UFO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8337587..8337828 | 19..260 | 100 | -> | Plus |
| 3L | 8337912..8338155 | 261..506 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:39 Download gff for
UFO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8330687..8330928 | 19..260 | 100 | -> | Plus |
| arm_3L | 8331012..8331255 | 261..506 | 97 | == | Plus |
