UFO05549.5prime Sequence
1030 bp (902 high quality bases) assembled on 2009-07-15
> UFO05549.5prime
CAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATGTCTACGAC
AGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAAAACGTGCC
CGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAATATTAATG
ACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGCAGGAAGAT
CTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGCTTCACCCC
GACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTCCATCCGGG
TGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCGTGGAAATA
ACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAGCTGGCAGA
CAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGCCGAGGTGA
TCAACCAGTGCATCGCCGCCAAGGGTGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAA
CCTGATCGCCAGCGGCATCAGCACTTGTCGCCTTGCGTATAATATTTGCC
CATGTGAAAACGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAATCAAA
CTGTGAACTCACCCAGGATGCTGAACGAAAAACATATCTCAATAACCCTT
TAGATAGCAGGTTCACGTACACGCACATCTGCAATTATGGTAGAACTGCG
AATCGTCTGGATTCATCAAGCGATGAACCG
UFO05549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7949-RA | 629 | CG7949-RA | 74..541 | 9..476 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10883138..10883485 | 129..476 | 1740 | 100 | Plus |
| 3L | 28110227 | 3L | 10882963..10883083 | 9..129 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:05 has no hits.
UFO05549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:28 Download gff for
UFO05549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7949-RA | 1..471 | 9..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:02 Download gff for
UFO05549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7949-RA | 65..546 | 1..483 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:49 Download gff for
UFO05549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7949-RA | 65..546 | 1..483 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:49 Download gff for
UFO05549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10882954..10883083 | 1..129 | 96 | -> | Plus |
| 3L | 10883139..10883485 | 130..476 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:02 Download gff for
UFO05549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10876054..10876183 | 1..129 | 96 | -> | Plus |
| arm_3L | 10876239..10876585 | 130..476 | 100 | == | Plus |
