UFO05556.5prime Sequence
1105 bp (997 high quality bases) assembled on 2009-07-15
> UFO05556.5prime
CAGTCGACATGGATGGTCTACAATATGCGGTCGAGTTTGCCCACGATGAT
AACCTACTGGGTGGTAGCCCATCGAATGTGTCTCAACTCTCGGAATTTCT
GGCCATGCTCACCCTTAAGTCAGCCGAGGAACGCAATGATGACGGCCAAA
ACCGTCATGACAAGCTCTTACAATTCAAACGGGAAGCCGATTTGCTGGCA
ACCAAATTTGATTCGCCCGATTATTACACCCAAAAGGAGGAATTAATCTT
CAAGGTCGTGTGTGAATTGCGGGGCATTGACCACGAGAAGTGGCTCCTGG
ATGAAATGGGACTCATGGATGAAGATGCATTTGGTGATTTTCTGCAGGAT
GCGTTTGTTGGCAATGGAGATGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGC
GATGAAACGTTTCAGTTTGCTCATGGAAACGGTGTACAGGGTGAACACTA
TCCATATAACAGCTCACGTCTTTCATTGGCAACAAATCGGATGAACATCA
TCAGGGGGCAGAATGTGAATAAGCGATAACTTGGGCTTATTTCTTACGCT
TAAGG
UFO05556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14072-RC | 735 | CG14072-RC | 246..609 | 8..371 | 1820 | 100 | Plus |
| CG14072-RB | 778 | CG14072-RB | 289..652 | 8..371 | 1820 | 100 | Plus |
| CG14072-RA | 521 | CG14072-RA | 32..395 | 8..371 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10937514..10937805 | 80..371 | 1460 | 100 | Plus |
| 2L | 23513712 | 2L | 10937384..10937456 | 8..80 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:44 has no hits.
UFO05556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:46 Download gff for
UFO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14072-RA | 47..414 | 1..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:09 Download gff for
UFO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14072-RA | 28..395 | 1..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:01 Download gff for
UFO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14072-RA | 28..395 | 1..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:01 Download gff for
UFO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10937380..10937456 | 1..80 | 96 | -> | Plus |
| 2L | 10937515..10937805 | 81..371 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:09 Download gff for
UFO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10937380..10937456 | 1..80 | 96 | -> | Plus |
| arm_2L | 10937515..10937805 | 81..371 | 100 | == | Plus |
