UFO05557.5prime Sequence
1053 bp (924 high quality bases) assembled on 2009-07-15
> UFO05557.5prime
CAGTCGACATGCCCGAAAAACCATCAGCAAAGTCGGCTCCGAGGCCCCTG
ACCAGCATAAAGGGGACCAGGCCCTCCACATCCTCATCCAATCCCACCAC
CAGCAGGAGCAAACCCACAGGAACTGGAGTGGTTCGACCACCATTGCCAA
ATGCACACGATAGGATTTGGAAGATTATGAAGATGGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGT
AACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCG
TGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACG
GTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACGTCTTTCATT
GCCATACGAATTCAGGATGAGCATTCATCAGCGGGCAGATGTGATAAGGC
GGATAAACTTGTGCTTATTTTTCTTACGTCTTAAAAGCGTATATCAGCTG
ACGGTCTGGTATAGTACATGAGCACTGACTGAATGCCTCAAATGTTCTTA
CGATGCATGGAATATCACGGGGTTATCAGTGAATTTTTTTCAATTAGCTC
CCT
UFO05557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11373-RA | 359 | CG11373-RA | 43..219 | 9..185 | 885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5960790..5960945 | 164..9 | 780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 751..820 | 124 | 67.6 | Plus |
UFO05557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:41 Download gff for
UFO05557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11373-RA | 41..220 | 9..189 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:20 Download gff for
UFO05557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11373-RA | 43..222 | 9..189 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:34 Download gff for
UFO05557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11373-RA | 43..222 | 9..189 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:34 Download gff for
UFO05557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5960485..5960505 | 165..185 | 100 | <- | Minus |
| 3R | 5960790..5960945 | 9..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:20 Download gff for
UFO05557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1786207..1786227 | 165..185 | 100 | <- | Minus |
| arm_3R | 1786512..1786667 | 9..164 | 100 | | Minus |
