UFO05560.5prime Sequence
1044 bp (915 high quality bases) assembled on 2009-07-15
> UFO05560.5prime
CAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTGTGGCCTGT
CTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAGTATCGTGG
TCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGAGGAGTTGG
ACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTCAGCAGGGC
TACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTGATACGCCA
CTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTCACCCAACG
ACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGTGCTCCGAC
GAATACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAA
ATAGGCCAGGTTTTCACCGTAACACGCACATCTTGCGAATATATGTGTAG
AACTGCGAAATCGTCGTGTATTCACCTCCAGAGCGATGAAAACGTTCAGT
TGCCTCATGGAAAACGGTGTAACAAGTGAACACTATCCCATATCCACAGC
TCACCGTCTTTTCATGCAACGAATTCGATGAACATCATCAGGCG
UFO05560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-RB | 522 | CG15199-RB | 25..373 | 8..356 | 1745 | 100 | Plus |
| CG15199-RA | 664 | CG15199-RA | 167..515 | 8..356 | 1745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11140790..11141032 | 250..8 | 1215 | 100 | Minus |
| X | 23542271 | X | 11140623..11140728 | 356..251 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:56 has no hits.
UFO05560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:26 Download gff for
UFO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 160..515 | 1..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:30 Download gff for
UFO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 160..515 | 1..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:46 Download gff for
UFO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 160..515 | 1..356 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:46 Download gff for
UFO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11140623..11140728 | 251..356 | 100 | <- | Minus |
| X | 11140790..11141036 | 1..250 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:30 Download gff for
UFO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11034656..11034761 | 251..356 | 100 | <- | Minus |
| arm_X | 11034823..11035069 | 1..250 | 98 | | Minus |
