UFO05563.5prime Sequence
1001 bp (864 high quality bases) assembled on 2009-07-15
> UFO05563.5prime
CAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTATTTACCCTA
ATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAAAATCAGGT
GGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGCCGAGACTT
CGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATCCGAACTAT
GGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGCTACAATAC
GAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATATGGATCTA
CCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCTACTACCCA
ACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACCACGAACAT
TCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTACGGAGGTA
ATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATTATCAGGGT
CAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGTTTGGGCCT
GCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCGTGGCTATA
ACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCAGCGAGCTCGATATCAAATTACGCCCCGCCTGCA
CTCATCGCAGTACTGTTGTATTCATTAGCATTTTGCGACTTGCAGCATCA
CAAACCGGCATGATGACTGATCGCAGCGCATCAGCACTTGTCGCTTGCTA
TTATTATTTGCATTGGTGAAACGGGGGAGAAGTTGTCTTATTGCCAGTTT
A
UFO05563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13285-RA | 787 | CG13285-RA | 103..696 | 9..602 | 2970 | 100 | Plus |
| CG13285-RB | 981 | CG13285-RB | 103..542 | 9..448 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5534828..5535270 | 602..160 | 2215 | 100 | Minus |
| 3L | 28110227 | 3L | 5535437..5535543 | 159..53 | 535 | 100 | Minus |
| 3L | 28110227 | 3L | 5535613..5535657 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:47 has no hits.
UFO05563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:48 Download gff for
UFO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13285-RA | 1..597 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:02 Download gff for
UFO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13285-RA | 103..699 | 9..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:13 Download gff for
UFO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13285-RA | 103..699 | 9..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:13 Download gff for
UFO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5534825..5535270 | 160..606 | 99 | <- | Minus |
| 3L | 5535437..5535542 | 54..159 | 100 | <- | Minus |
| 3L | 5535613..5535657 | 9..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:02 Download gff for
UFO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5528537..5528642 | 54..159 | 100 | <- | Minus |
| arm_3L | 5528713..5528757 | 9..53 | 100 | | Minus |
| arm_3L | 5527925..5528370 | 160..606 | 99 | <- | Minus |
