UFO05566.5prime Sequence
1036 bp (921 high quality bases) assembled on 2009-07-15
> UFO05566.5prime
CAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGGTGAAATGT
TGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTATGCCTGCAT
ACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTTGAAGGTGC
TCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGCTGGCTAGG
CTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGAAGCGGCTC
CTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTTGACACATC
TGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCCAGTTGGTT
CGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACGACTGACTG
TGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATGCGTCTCGA
TATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCATTGCAAAA
TGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTCAATACAAA
GTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGTTGCCTTAG
TCTTAAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
GCCTGCACTCATCGCAGTACTGTGTATCATAGCATTCTGCGACATGAGCA
TCACAACGCATGATGACTGATCGCAGCGCATCAGCACCTGTCGCTGCGTA
TAATATTTGCCATGTGAACGGGGCGAGAGTGTCATATGCAGGTTATCGAC
TGTGACTCACCAAGAATGCTGAACGAAAACCTTCCA
UFO05566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12520-RB | 1407 | CG12520-RB | 677..1276 | 9..608 | 3000 | 100 | Plus |
| CG12520-RC | 1427 | CG12520-RC | 697..1296 | 9..608 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12901378..12901977 | 608..9 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:03:56 has no hits.
UFO05566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:57 Download gff for
UFO05566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12520-RB | 514..1116 | 9..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:46 Download gff for
UFO05566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12520-RC | 697..1302 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:41 Download gff for
UFO05566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12520-RC | 697..1302 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:41 Download gff for
UFO05566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12901372..12901977 | 9..616 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:46 Download gff for
UFO05566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12894472..12895077 | 9..616 | 99 | | Minus |
