UFO05567.5prime Sequence
1018 bp (849 high quality bases) assembled on 2009-07-15
> UFO05567.5prime
CAGTCGACATGCAGGTCCACCAGGCTGTGTTTGGAGCCGCCGTGCTCGGC
ATGCTGTTGGCCATCGGCTGTTCCCTGCCCGTTTTGGATGCCAGTTCAGG
CATCGACAACGCCACCATCGAGGAGCTGAGGGCCAGCGTCAACGATACGC
CCAAGAATCTCTATGTGGTCAAGGCGGTGGTCTATGAGATCGGCATCCTG
ACGGAGGTGGGCGAGAATGACACCAGTTTTGAGAGCCAGGAACGCGTGGA
TCTGACCTTCTACGACACGCACAGCAACAAGAGTCACATTGACCTGGGCA
ACATCCCGCTGCCCATCCAGACCAATGTCACCGGTCAAGTGCTGACCGGC
ATCGCACCCGTGAATCTGGGAGCCTTCAGCAGCCCCCAGGAACTCCTAGA
AACCCTTCCCCTGACCGGAAGCATTGTGAACATCACGCACAGCGACACCG
CCTTCTATCAACTGAGCAGATCGAACACCAGTGCCGCGGACAAGCCACAG
ATTCTGGATCAGGATGCGCTGGCCAAGCTCACGCACGCGGCCCAGTTGTT
CCCGCCATCGTCGCAAATTGGCCAGTCGGTGCCAGTGAACCCAGCTGCCG
ATAACGAGGTGCCCCAGACGGAACCCGAGGATGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATC
CAGATGGAGTTCTGAGTCATTACTGATCTATCACAGAGTCAGCGAGCTCG
ATTATCAATTACGCCCCGCCTGCACTCATCGCAGTACTGTTGTATCATTA
GCATTCTGCGACATGCAGCCATCCCAAACGCATGATGACTGATCGCCAGC
GCATCAGCACTTGTCGCTTGGGTATATATTTGCATGGTGAAACGGGGGCA
GAGTGTCTATTGCCGTTT
UFO05567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14949-RA | 934 | CG14949-RA | 79..702 | 9..632 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2642416..2642887 | 632..161 | 2360 | 100 | Minus |
| 3L | 28110227 | 3L | 2643195..2643346 | 160..9 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:59 has no hits.
UFO05567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:58 Download gff for
UFO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14949-RA | 1..627 | 9..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:22 Download gff for
UFO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14949-RA | 79..712 | 9..643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:36 Download gff for
UFO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14949-RA | 79..712 | 9..643 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:36 Download gff for
UFO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2642406..2642887 | 161..643 | 99 | <- | Minus |
| 3L | 2643195..2643346 | 9..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:22 Download gff for
UFO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2642406..2642887 | 161..643 | 99 | <- | Minus |
| arm_3L | 2643195..2643346 | 9..160 | 100 | | Minus |
