UFO05572.5prime Sequence
1034 bp (940 high quality bases) assembled on 2009-07-15
> UFO05572.5prime
CAGTCGACATGCCACGAGGAAAGTTCCTTAGCTACAAGGGTCGCACTCGC
CAGTTCACATCCCCCGAGGAACTGCGGCAGGAGTCAGAGGACGATTACGA
CCAAGTCAGCGGCTCTGGTTCAGATAGCGATGAGAAAGTAGCAACCAGGG
GAGGAGCCAATTCATCCTCCTCCATAGCAAAGGATCGCACCTTGAAAAAA
GCGACTCGCAATCAGAAATCGTCGTCAGATGAGGTGGACAGTTCTTCCGA
GGATTGCGAAACGGAATCTCGTGTTGCCAGAAAGGGCGTGGCTTCACTCA
TTGAAATCGATAATCCCAACCGGGTGTCCAAGAAGGGGCCACAAAAGATT
TCAGCCATTATGCTTGATCAGACCAAGGCGGGGCTATCCCGCCGCGATCA
AGATCAGAGTGCTCGCAAGCGTTACGAGAAACTCCATGTAGCTGGGAAAA
CCACCGAGGCTAGGGCCGACTTGGCCAGGCTGGCTCTGATCCGGAAGCAG
CGCGAAGAAACCGCTGCTAGGCGTGAAGCGGAGAAGAAAGCAGCCAATGT
GGTCACCAAGAAGCCGTTTGCCAAGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCGACATGAAGCATCACAAACGGCATGATGAACCTGA
TCGCAGCGCATCAGCACTTGTCGCTTGCGTATATATTTGCCCATGTGAAA
CGGGGCGAAGAAGTGTCATATGCCACGTTAATCAACTGTGAACTCACCAG
ATGCTGAAACGAAAACTATTCTCATACCGTAAGA
UFO05572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4438-RB | 922 | CG4438-RB | 174..741 | 8..575 | 2840 | 100 | Plus |
| CG4438-RA | 819 | CG4438-RA | 182..749 | 8..575 | 2840 | 100 | Plus |
| CG11444-RB | 1282 | CG11444-RB | 891..1061 | 405..575 | 420 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9397180..9397747 | 575..8 | 2840 | 100 | Minus |
| X | 23542271 | X | 4553338..4553508 | 575..405 | 420 | 83 | Minus |
| X | 23542271 | X | 4553853..4553983 | 138..8 | 325 | 83.2 | Minus |
| X | 23542271 | X | 4553591..4553692 | 358..257 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:38 has no hits.
UFO05572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:45 Download gff for
UFO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4438-RA | 176..749 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:55 Download gff for
UFO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4438-RA | 176..749 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:09 Download gff for
UFO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4438-RA | 176..749 | 1..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:09 Download gff for
UFO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9397180..9397750 | 1..575 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:55 Download gff for
UFO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9397180..9397750 | 1..575 | 99 | | Minus |
