UFO05574.5prime Sequence
990 bp (853 high quality bases) assembled on 2009-07-15
> UFO05574.5prime
CAGTCGACATGAGCCGACAAACAAAAATGTTCGGCGAGAAAGCCTTCGAC
CTGCTTAAAGAACTGGAGAGATCGTCTCAGACAATTCCCGCCTTCGACGA
CGATGGGGTGCGCCAGGTGCTGGAGGAGATCAAGGCGATATTCGAGGAGA
ACGTGGCCCAGGCCTCCAGCTACAATGCTTCCGGGGATCGCAGTCTGTGG
CCCCTGCTCAACTTCAGGCACGCAGCTCTCCAGAGGAACAAGCGGTGCCT
GCTGGCCTACCTATACGAGCGGTGCAGGAGGATCAAGGCCCTCAGGTGGG
AGTTTGGACCCATTATCCCCGGGGACATCAAGCAGGCACTCTGCGAACCG
GAGGTCACCTTCTTCAACAACTACTCCAAGTCCCTGGCTGCCTACATGTG
CAGTGCGGGCTACAACCAGGGCTTGCCCATTGATCTAACCAACAATCTGC
GTCCGCCCAAGTCACTTTACATCGAGGTGCGCTGCATGGAGGACTATGGG
AAGTTCGAGCTGGACGACGGCGAGGTGATCCACCTGAAGAAGAACAGCCA
GCACTATCTGCCCCGAGCTCAGGTGGAGTCTCTCGTGAGGCAGGCATTCT
TCACCACATAGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTACG
CCCCGCCCTGCACTCATCGCAGTACTGTTTGTATTCATTAAGCATTCTGC
GACATGGAAGCATCCAAACGCATGATGACTGATCGCCAGCGGCATCAGCA
CTTGTGCTGCTATAAATTTGCATGTGAACGGGGCGAGAAG
UFO05574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf1-RA | 692 | CG9187-RA | 4..609 | 9..613 | 2960 | 99.3 | Plus |
| CG32318-RA | 785 | CG32318-RA | 608..782 | 440..613 | 850 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1247069..1247674 | 613..9 | 2935 | 99.3 | Minus |
| 3L | 28110227 | 3L | 1246076..1246250 | 613..440 | 825 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:08 has no hits.
UFO05574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:01 Download gff for
UFO05574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 9..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:34 Download gff for
UFO05574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 7..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:49 Download gff for
UFO05574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf1-RA | 1..609 | 7..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:49 Download gff for
UFO05574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1247069..1247679 | 1..613 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:34 Download gff for
UFO05574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1247069..1247679 | 1..613 | 98 | | Minus |
