UFO05576.5prime Sequence
999 bp (878 high quality bases) assembled on 2009-07-15
> UFO05576.5prime
CAGTCGACATGGAAGTTGGTGTTACCCTAAACAACGAACTCGAGGAAAAG
ATTTCGGAAGCATTTTGCATATTTGATACTCATGGCGATAAGTATATTGA
TTCCCGCAATGTCGGCAACGTGCTCCGATTTTTAGGTTGCGCGCCCACCG
AAAAAGAGGTCGAAGATGTCATTAAAGCCACCGATTCCGTCGACTATCCA
GGCGAAGCCCATTTGGTGAAGTTCATGGAACACGTTTCCAAACTGCTGAT
GGATCGACAAATGGAACCAGCCTCGTCGGAAAAGCTTCTCGAGGCCTTTG
AGACCCTGGATCCAGAAAATAAAAAATATCTGACCAAGGAGTACTTCGGC
AAATTAATGGCGGAGGAAGGAGAACCTTTCTCCGCTGAAGAATTGGATGC
TATGTGGCCTGTGGCAATTGATCCCATTACTGGACACATTCCCTACACCT
TCTACATAAATCAACTCAGGCACAAGCCTGATATCTATGAAATTGCCGAG
GTTATCAAGGAGGAACTAGCACAAGCCGAAAAAGAAAAGGGCAAGAAACC
ACAACAACCACTGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATT
ACGCCCCGCCCTGCACTCATCGCAGTACTGTGTAATTCATTAGCATTCTG
CGACATGCAGCATCACAAACGCATGATGACTGATCGCAGCGCATCAGCAC
TGTCGCTGCGTATAATATTTGCCATGTGAACGGGGCGAGAGTGTCATATG
CCACGTATCCAACTGTGACTCACCAGATGCTGAACGAAACCATTTCCAT
UFO05576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9406-RA | 732 | CG9406-RA | 108..665 | 9..566 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21142545..21142783 | 21..259 | 1195 | 100 | Plus |
| 2R | 25286936 | 2R | 21142836..21143046 | 260..470 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 21143098..21143194 | 470..566 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:47 has no hits.
UFO05576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:03 Download gff for
UFO05576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9406-RA | 28..593 | 1..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:33 Download gff for
UFO05576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9406-RA | 103..665 | 1..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:44 Download gff for
UFO05576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9406-RA | 103..665 | 1..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:44 Download gff for
UFO05576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21142836..21143046 | 260..470 | 100 | -> | Plus |
| 2R | 21143099..21143194 | 471..566 | 100 | == | Plus |
| 2R | 21142539..21142783 | 16..259 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:33 Download gff for
UFO05576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17030044..17030288 | 16..259 | 99 | -> | Plus |
| arm_2R | 17030341..17030551 | 260..470 | 100 | -> | Plus |
| arm_2R | 17030604..17030699 | 471..566 | 100 | == | Plus |
