UFO05577.5prime Sequence
1110 bp (984 high quality bases) assembled on 2009-07-15
> UFO05577.5prime
CAGTCGACATGGCGTGGTGCTTCCGCGACATTCGGCGCCACATGTGCATG
CTGGTGCGTCAGAACTTCGCCAAAAGTTGCGAGAAGAAGCTAAACGATCA
GATCAACATGGAGTTGAAGGCATCCCACCAGTATCTGGCCATGGCCTACC
ATTTCGATCGCTCCGATATCAGTTCACCCGGAATGCATCGATTCTTCCTA
AAGGCGAGCGTCGAGGAGCGGGAGCACGCGGAGAAGATCATGACGTACAT
GAACAAGCGTGGTGGTCTAATCATTTTGAGCAGTGTACCACAGCCGTTGC
CCTGTTTCGCCAGCACCTTGGATGCACTAAAGCACGCAATGAAAATGGAA
CTGGAGGTCAATAAGCATCTGCTCGATTTGCACGCCCTGGCTGGCAAGGA
AGCGGATCCGAATCTCTGCGATTTCATCGAGGCCAATTTCCTGCAGGAGC
AAGTGGATGGCCAGAAGATTCTGGCCGACTATATTAGCCAATTGGAGAAG
GCACAAAACCAGGTGGGCGAATTCCTGTTCGACAAGTATATGGGCAGCGG
CATGCATCCTGCGAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTGATCGCAGC
GGCATCAGCACTTGTCGCCTTGCGTATATATTTGCCATGGTGAAACGGGG
CGAGAGTGTCCATATTGCCACGTTTAAATCAAACTGTGAACTCCACCCAG
GATTGCTGAAACGAAAAACATATTTCTCATAACCTTAGGAATAGCCAGTT
TCACCGTACCGCCCCATCTTGCAATATATGGGTAACTGCCGGAATCGTCT
GTTATCACTC
UFO05577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer3HCH-RA | 751 | CG4349-RA | 96..656 | 6..566 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13107477..13107900 | 566..143 | 2120 | 100 | Minus |
| X | 23542271 | X | 13107961..13108099 | 144..6 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:04 has no hits.
UFO05577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:04 Download gff for
UFO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 1..561 | 9..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:50 Download gff for
UFO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..660 | 1..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:45 Download gff for
UFO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer3HCH-RA | 91..660 | 1..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:45 Download gff for
UFO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13107473..13107899 | 144..570 | 99 | <- | Minus |
| X | 13107962..13108104 | 1..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:50 Download gff for
UFO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13001506..13001932 | 144..570 | 99 | <- | Minus |
| arm_X | 13001995..13002137 | 1..143 | 97 | | Minus |
