UFO05578.5prime Sequence
1013 bp (908 high quality bases) assembled on 2009-07-15
> UFO05578.5prime
CAGTCGACATGGCTCGACTAATGGCCTTGATCATGGCGGTGTTGCTTCAC
TCGGTACTGGGCATCTCGTACTACTACTACTTTCGCGAATCTCCCGGCTC
CGCTGCTCCTCTCTTGGGCGCCTGGCTCTTTTCCGCCTGCGTTGTGACCC
TTCTTCACGGGGTGAGGATGTTTTCAAGTGCCCTGCCCGCCGATCAGCGG
TTCAGGAATGGGAATCGAAACCTTCGCGGCAATGAGTCGTCCTGGGCATC
GCTCTTACTGGAGACAGGCGTCTGCTGTTTGGTGCTGGATCTGACCCTTA
GCAAACTGTGGCATCGCATAGAGTCCCTCTGCCAGTGCGCCATTGTGGGC
ATACTCCAGGCCTTGGCCGTCGAGGAGCAAACCTTCCTGGTCTGCGAGTA
CTGGACTTTGGGCCTGACTACCGGCCTGATCGGCGCATGTCTTCTGTGGC
TTTCCCTATGGGCCACCGCGTTGCCCCAGAAGCTCCGCTGCGGGATGCTC
GACTGGCGTCGCACCCTTCATCGCCGCTGCTCCGCGCTGATCTTCGGAAG
TCTCGAGCCCGGCACTCCAATGCAGACCCAATCCCAGGGAAGCGCACAGA
GCTTTGCCAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCGCCTGCACTCATCGCAGTACTGTGTATTCATTAGCATTCTGCCGACA
TGAGCCATCACAAACGCATGATGACTGAATCGCAGCGCATCAGCACTGTC
GCTTGCGTATAAATATTGCCATGTGAACCGGGCCAGAGTGTCAATGCCAG
TCATCCAACTGGT
UFO05578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11379-RB | 1387 | CG11379-RB | 100..702 | 9..611 | 3000 | 99.8 | Plus |
| CG11379-RA | 783 | CG11379-RA | 100..702 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1180264..1180866 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:49 has no hits.
UFO05578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:06 Download gff for
UFO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 49..663 | 1..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:05 Download gff for
UFO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 91..702 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:44 Download gff for
UFO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11379-RA | 91..702 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:44 Download gff for
UFO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1180255..1180866 | 1..611 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:05 Download gff for
UFO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1074288..1074899 | 1..611 | 99 | == | Plus |
