UFO05580.5prime Sequence
1000 bp (847 high quality bases) assembled on 2009-07-15
> UFO05580.5prime
CAGTCGACATGGTCGTTGCCCTTGAAAGCCAGGGAATGACAGATATCGAT
GCAGTTCAGCTGGATCGAAAATTTAGGAACCTGAAGAAGACCTACTATAG
CATAAGGAGCAAGCTCCTGGCGAAGGTACCGCATTTCCATCCAAACTGGC
AGTTCTACGACGAGATGTCCGAAATTCTAAAGGATGACCCTGTCCCACCG
CCGCAGGAACTTTCCATCAATGATTTCGATGAAGCGGTGGTCAGTTTGGA
GACCGGTATCCAGAAAGGCAGGATGCTGTCTATGGGCACCACTGTCAGCA
CAGTTATTCCCCGCCAAATGCGTACGTATCGCAAACGAAAGCAGCCATTG
GATGATGTCGATATCAAGATCCAGAAGGACTACGAAGTGCAAACGGATCG
GCAGCGGGATGGGGAACAGTTTACAGTCTTTAATGCCGCCGAACCCAATA
CTAATGATTTGTCAGAGTCTGCGGCCGAGATCTCCATCAGCAACGACGAA
GAGGCATTGAGACACCTAAGAGCGCTCCAGGAGTACGCCATGATCCATGA
TAATTTCAGGGCCATAGGACTGCTAATACAGGTGGAGCACGCCATTCAAT
ATCCAGCCCAGATCAAGGACTTCGAGGTGGATCAAACGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAATCCAGATGGAGTTCTGAGTCATTACTGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATACGCCCCGCCTGCCCCTCATCGCAGTACTTGT
TGTATCATAGCATTCTGCGACTGCAGGCATCCAACGCATGATGACTGATC
GCCAGCGCATCAGCACCTTGTCGCCTGCCTATATATTGCATGTGAACCGG
UFO05580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13896-RB | 972 | CG13896-RB | 218..847 | 9..638 | 3150 | 100 | Plus |
| CG13896-RC | 974 | CG13896-RC | 220..849 | 9..638 | 3150 | 100 | Plus |
| CG13896-RA | 1000 | CG13896-RA | 246..875 | 9..638 | 3150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 710945..711574 | 638..9 | 3150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:17:57 has no hits.
UFO05580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:12 Download gff for
UFO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RB | 215..847 | 6..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:10 Download gff for
UFO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 243..875 | 6..638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:17 Download gff for
UFO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13896-RA | 243..875 | 6..638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:17 Download gff for
UFO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 710945..711577 | 6..638 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:10 Download gff for
UFO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 710945..711577 | 6..638 | 99 | | Minus |
