UFO05581.5prime Sequence
1070 bp (930 high quality bases) assembled on 2009-07-15
> UFO05581.5prime
CAGTCGACATGACCTCCTCTTTGGCCAAAATCGAGGACTTTCCCTCCGAT
CCCGTTGAATTTTTTAAGGAGATCCTTCAGGAAGCTGCCAAGGGACATCC
CGATGGATTCATACAGGAAATGAACCTGGCCACCGTGGACGAGGAATTCG
GTGTGCTCAACCGCACTGTTCTGTACCGCGGACTCACCCAGGATAACTGT
GTGTTCTACATCACCCATCGGTACGTTCGCAACTTCAAGAACCTTCAGGC
CAATCCCAAGGCCTGCATCACCTTCTATATGCCAGATGTTAAGGATAAGG
CCGGAAATCAGAATGCCTGGCAGGTGAGATTGATTGGAGCCACCGCCGTG
GAACTTGACCAAAGCGAAATGGATGCTTTGTGGGCGAAGGAGAATTTGGC
TGCCCAAATCAGGGGTCACATCTGTCCCTGTGGAGAACCGATTAACTACG
ATGATCTCAAGGCAAAGCACGATCAGTTCCTTCTGGATCACAGAGGAAAA
TCCATCGAGAGACCAGCAAGCTATACCGCTTGGAAATTCCAACCGCAGCG
TTGGGACTTCCTGAAGGTGGGTCTCGACCAAATCGCAGACCGGGTGCAGT
ACCGCCTTCAGAAGGATGGGAAATGGAAATCCATGCACGTGTCCACCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATC
AACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACTCAT
CGCAGTACTGTTGTATCATAGCATTCTGCGACATGCAGCATCACAAACGC
ATGATGACTGATCGCAGCGCATCAGCACTGTCGCTGGCGTATAATATTTG
GCCATGGTGAACCGGGGGCGAAGAAGTTGTTCATTGTCACGTAATCAAAC
TGGTGAACTCCCAGATGCTG
UFO05581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..774 | 9..647 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 523..9 | 2575 | 100 | Minus |
| X | 23542271 | X | 8272498..8272621 | 647..524 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:31 has no hits.
UFO05581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:14 Download gff for
UFO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 9..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:57 Download gff for
UFO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..779 | 1..655 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:38 Download gff for
UFO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..779 | 1..655 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:38 Download gff for
UFO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272493..8272621 | 524..655 | 96 | <- | Minus |
| X | 8272693..8273214 | 1..523 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:57 Download gff for
UFO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166526..8166654 | 524..655 | 96 | <- | Minus |
| arm_X | 8166726..8167247 | 1..523 | 99 | | Minus |
