UFO05582.5prime Sequence
1109 bp (985 high quality bases) assembled on 2009-07-15
> UFO05582.5prime
CAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAGTGTTTAAG
CACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATGAAGGTGAA
ACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACTCAACGAAA
TGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCCTCCTGGGC
ACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAGCAGACGGA
TCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCCGCGAGACT
TGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCGGAGTCCTG
CTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATTCGGAAAAA
TCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCATCGCAACCG
AAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATCACCGACAC
GTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAGGCATCCCA
TCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGACCCAGGAGG
CCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACGACAGTCAG
CCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCGCACTTCAC
CCTGGAAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGCTACGCTA
GTGCACGATATGGCTTTGGACCTCCGAACCGTGACGCACTGCTCCCAACT
ACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTGCTCAGAC
ACGCCTGGCACTTGCCAGGAATTATCAAGAACCTCCGTCAACAACGTGAC
ATCCTGAGGCGCATCCACAGCTTCTGCGACAACAGCGAGTGAACTGCGAG
CTACAGAATGCAAGCTTTCTAGAACCATTCGTTTGGCCGCGCGGGCCCAG
GTAAGGGTCAATAATCATAATCAATCATAATCATAATCACAAACTAGCCC
TAGGAAGATTCTGGTCATGAACATATGGCGTGAATTCTTCACCAATAAAA
CGCCCGCCG
UFO05582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7849-RB | 1075 | CG7849-RB | 67..1016 | 9..957 | 4665 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6077423..6078029 | 352..957 | 2875 | 99.3 | Plus |
| 2R | 25286936 | 2R | 6077160..6077373 | 138..351 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 6076976..6077106 | 9..139 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:40 has no hits.
UFO05582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:28:59 Download gff for
UFO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7849-RB | 1..954 | 9..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:30 Download gff for
UFO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7849-RB | 59..1020 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:41 Download gff for
UFO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7849-RB | 59..1020 | 1..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:41 Download gff for
UFO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6076968..6077105 | 1..138 | 97 | -> | Plus |
| 2R | 6077161..6077373 | 139..351 | 100 | -> | Plus |
| 2R | 6077423..6078029 | 352..957 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:30 Download gff for
UFO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1964473..1964610 | 1..138 | 97 | -> | Plus |
| arm_2R | 1964666..1964878 | 139..351 | 100 | -> | Plus |
| arm_2R | 1964928..1965534 | 352..957 | 99 | == | Plus |
