UFO05583.5prime Sequence
1067 bp (961 high quality bases) assembled on 2009-07-15
> UFO05583.5prime
CAGTCGACATGAGCCAATACGACTATCTGTTTAAGATTCTCGTCCTGGGT
GACATCGGCGTGGGCAAATCCTGCCTGCTGATGCGTTTCTCGGATAACCG
ATTCACCGAGAAACACGTGTGCACGGTGGGCATGGATTTCAGGGTGCGCA
ACGTGGAGTTGGCCGGTCGGATGGTTATGCTGCAGATCTGGGATACCGCC
GGCGATGAGCGCTTTAAGTCGCTGCTGCCATCCTATTATCGCGGTGCCCA
TGGCATACTGCTCGTTTACGACATAACGTCGTCCAAAAGTTTCCGAAACA
TCGATGGCTGGCTGAAGGAGATACGGCGCATGTCTTCGGAAAGTGTGAAC
GTCATGCTGGTGGGCAACAAGTGTGATGATCTGGATAATCGTCAGGTGCG
CATGGAGCAGGGTTTCAACTATGCCAATCATCGGGCACTCGGCTTTTATG
AGGTTTCCGCCAAGAGTGGCGCGAATGTAAATGACGTATTCAACATGTTG
TCAGTTGGCATATACAATCGTCTTGTGATTCATACCCCAAATCGCTTGTC
AGGTGGGCAAGAAACGGAGGACACTGCAGAGCCACCGGATGAACCAATCA
ATTTAGCTGGCAAAGATCGGCAGAGGGCCAAAGACAGCAATACCTGCTGT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
ACTCATCGCAGTACTGTTGTATTCATTAGCATTCTGCGACATGAGCATCA
CAACGCATGATGACTGATCGCCAGCCGCATCAGCCCCTGTCGCTTGGCGT
TTATATTGCCATGGGTGAACGGGGGGGAGAAGTTGTTCTATTGCCGGTTT
ATTCAACTGGTAACTCC
UFO05583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9Fb-RA | 878 | CG32670-RA | 68..709 | 9..650 | 3210 | 100 | Plus |
| RabX2-RA | 791 | CG2885-RA | 68..717 | 9..650 | 1610 | 83.9 | Plus |
| Rab9Db-RA | 871 | CG9807-RA | 68..712 | 9..644 | 1280 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10951778..10952419 | 650..9 | 3210 | 100 | Minus |
| X | 23542271 | X | 10417496..10418122 | 9..631 | 1535 | 83.7 | Plus |
| X | 23542271 | X | 10622514..10623158 | 644..9 | 1220 | 80 | Minus |
| X | 23542271 | X | 10589182..10589826 | 9..644 | 1175 | 79.5 | Plus |
| X | 23542271 | X | 10661114..10661758 | 644..9 | 1175 | 79.5 | Minus |
| X | 23542271 | X | 10950319..10950963 | 644..9 | 1160 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:00 has no hits.
UFO05583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:00 Download gff for
UFO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fb-RA | 68..722 | 9..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:18 Download gff for
UFO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fb-RA | 68..722 | 9..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:06 Download gff for
UFO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9Fb-RA | 68..722 | 9..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:06 Download gff for
UFO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10951765..10952419 | 9..665 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:18 Download gff for
UFO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10845798..10846452 | 9..665 | 99 | | Minus |
