UFO05587.5prime Sequence
1026 bp (935 high quality bases) assembled on 2009-07-15
> UFO05587.5prime
CAGTCGACATGGTCTATCCCGAAGAACCTTTTTGGGTTTTACCAACCGTA
ACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTTGAAGCCCT
ACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATTGAAAAATG
GAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGCCATACATT
TGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTTCAAAACTG
TCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGCCCTAATGA
ATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATGAGTTCATT
CAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACATCGCAAAT
CAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCATGCTGGAGG
CGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGACCGTGTTC
CAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAACGCCACTG
CTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCTGGACGACG
AGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGCACGATAAT
CCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAGCTGGAGAC
CTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAGATGATATC
CTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTAACTCGGCTAC
CATTGATGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATATCATATCATATCATATCATATCACACTAGCCTAGAGAT
CCTGTCATGACTAGTGCTGATCCCACCATAAAAACGCCCGCGCACGGCGT
TCTGAACAATCAGATGAGTTCTGAGTCATACTGATCTATCAAGGAGTTCA
GCGAGTCGGAATTCAATAGCCGCCTG
UFO05587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lft-RB | 1281 | CG13139-RB | 214..1017 | 9..810 | 3955 | 99.6 | Plus |
| lft-RA | 1266 | CG13139-RA | 199..1002 | 9..810 | 3955 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10365769..10366146 | 435..810 | 1795 | 98.9 | Plus |
| 2L | 23513712 | 2L | 10365490..10365680 | 246..436 | 955 | 100 | Plus |
| 2L | 23513712 | 2L | 10365263..10365428 | 80..245 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 10365118..10365190 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:14 has no hits.
UFO05587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:41 Download gff for
UFO05587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13139-RA | 1..807 | 9..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:34 Download gff for
UFO05587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lft-RA | 199..1007 | 9..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:33 Download gff for
UFO05587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lft-RA | 199..1007 | 9..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:33 Download gff for
UFO05587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10365118..10365190 | 9..81 | 100 | -> | Plus |
| 2L | 10365265..10365428 | 82..245 | 100 | -> | Plus |
| 2L | 10365490..10365680 | 246..436 | 100 | -> | Plus |
| 2L | 10365771..10366151 | 437..818 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:34 Download gff for
UFO05587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10365118..10365190 | 9..81 | 100 | -> | Plus |
| arm_2L | 10365265..10365428 | 82..245 | 100 | -> | Plus |
| arm_2L | 10365490..10365680 | 246..436 | 100 | -> | Plus |
| arm_2L | 10365771..10366151 | 437..818 | 98 | == | Plus |
