UFO05588.5prime Sequence
1059 bp (927 high quality bases) assembled on 2009-07-15
> UFO05588.5prime
CAGTCGACATGAGCAGCACGCGCTACGGCCGCACTTTGCTCGGCATTTGG
AGTGGATTATTGGCCATTTTGTGCCTGAATGAAATCGCCATGGATAGGTC
GTTGGTTTCAGCCGTTGCCTACTACTCCGAAAAACCTGCCTTTCTGCCAT
CTTGTCGGATCTACGAACCGGGCTTCACCAAGTGCTCTACGAATAGCATT
CAGAAGCTTCTTGATCAGTTGAACATTGGAATACCAGAGGTGCTCGAGCG
GTTCGGTCCCTTTGATCCCATGAGAGTTAGGGATATAGTTTTCAAGCAGG
ATAACAACGAGGTGGCCACCATCAGAGCCAATCTGACTGACCTGGTGGTC
AAGGGTTTTGCCAACACAAAGGTCAAGGAGAGTCGTGTGAGCAAGAAAGA
CTTTAGCTGGCAGACCAAAATATATCTTCCGAAAATGAGACTGGATGGAA
GGTATGAAATGGCTGGACGAATACTCCTTATACCACTGAGTGGCTCTGGC
AAAATATTTATTGAGATTGATGATCTTGACATTTTGCTACTAACAAAAAT
ACGTCTGTATGAAAAGGGTGGCTTCACCTTCGACAACGTGACCGCTGTGC
AGGTTCAACTGAATCTGTCCAAAGTGCGCACTTATCTGGACAATCTATTC
AATGGACGTAGCAAGGAGGTGGAGCGCAGTACGAATGAGTTTTTCAATGA
AAACTGGCGGGATTTCTACGAGGCCCTGAAACCACTCATCGTTGAGACGT
GGAAAATATCCTTTATGATGTAATGTCTACGGTTTTCATTTAATACCAGC
CAACTTTTTCGTTGAGGACATACCAACGCCCCAGCAACTTTATGGTCCAA
AGGAGATACTTGACAAAAAAGAAGCAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAGTGTCATATCATATCATATCATATCATATCACACTA
GCTAGAGATCTGTCATGACTAGTGCTGATCTCACAATAAAAACGCCCGCG
CCACCGACGTTCTGACATCGATGGAGTTCTGGAGTCATACTGAATCTTCA
CAGAATCAA
UFO05588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14259-RA | 1072 | CG14259-RA | 120..987 | 8..873 | 4275 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27095415..27095771 | 519..873 | 1670 | 99.2 | Plus |
| 3R | 32079331 | 3R | 27094839..27095088 | 136..385 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 27095212..27095346 | 385..519 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 27094652..27094779 | 8..135 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:37:47 has no hits.
UFO05588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:42 Download gff for
UFO05588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14259-RA | 1..870 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:31 Download gff for
UFO05588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14259-RA | 150..1028 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:15 Download gff for
UFO05588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14259-RA | 114..992 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:15 Download gff for
UFO05588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27095213..27095346 | 386..519 | 100 | -> | Plus |
| 3R | 27094839..27095088 | 136..385 | 100 | -> | Plus |
| 3R | 27094646..27094779 | 1..135 | 97 | -> | Plus |
| 3R | 27095416..27095776 | 520..880 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:31 Download gff for
UFO05588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22920368..22920501 | 1..135 | 97 | -> | Plus |
| arm_3R | 22920561..22920810 | 136..385 | 100 | -> | Plus |
| arm_3R | 22920935..22921068 | 386..519 | 100 | -> | Plus |
| arm_3R | 22921138..22921498 | 520..880 | 98 | | Plus |
