UFO05589.5prime Sequence
992 bp (836 high quality bases) assembled on 2009-07-15
> UFO05589.5prime
CAGTCGACATGTTGCGCGAAAACCCCCCACCGCGCCAAAAGAGTTGGGTG
GGACCCACGTACAGAGTAACCATAATTATGCTCGTCATCGGACAGATTCA
GGTCTCGGTGGCGATGGAGATCACTCCCCTGAAGGAATTTCTCGCAGATC
GCTACTACCTCAGTCTCGTGCAATTTGTCGTCAGCTTCCTATCCATCCAG
CTCTACGGATTTTTCTACCACATAATCGTTAAAAAGCCTATGTGGGTGCG
GTTATTGGCGGGCCTCTGGACGTACGAGGTGAACACCATGTCGATCATGA
AGCCCGCCAAACGTGCCCCTTATATAAGCCTCATCCTGTCAATCTTCCTA
ACATTCCTTATGATGATCATCAGTGTGATATACGGAAATAGTGCCATCAA
ACACAAGAAAGGCCTTTTCACTACCCGGCATAAGGTTATCCTGTGGAGCG
AGCGCATATTTGTCCTCACCTGCTTTGGCATCATCGTGTGTGCCGAGATG
AAGCGTGTTATCATAGAGTTTCCAACCCTGCTAGTATACACCATTCTCTC
GAGCGTGTTTGTCATAGTCTTTGGCGCTTCCATGCGAAAGCCGAACTTCT
ACCGCCAGGAGTCGACCGGGGACTACATACTGATCGGCCAGCTGTACTAC
CTCAACTTTTTTGCCCTATATATGGGCTATGTGTGGACGACAGCCTCGTT
TATAGAATTGATGGGATGGCGCGCGGACATTCATGATATATTCGTGTACC
TGTTCTATCGGAAGAACATCGAAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATATCATATCATATCATAATCATAATCA
CCACCTAGCCTAGAAGATCCTGTCATGACTAGTGCTTGATTCCTCCACAA
TAAAAACGCCCGGCGCAACGAGCGTTCTGACATCGAATGAGTTCTTGAGT
CATACTGATCTTCAACAGGGTCAGCGGGCTCGATTCATACGC
UFO05589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12914-RA | 1253 | CG12914-RA | 242..1006 | 9..773 | 3825 | 100 | Plus |
| CG12914-RB | 1238 | CG12914-RB | 242..991 | 9..773 | 3590 | 98 | Plus |
| CG12914-RC | 1251 | CG12914-RC | 217..1004 | 9..773 | 3585 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10248941..10249157 | 557..773 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 10248312..10248462 | 122..272 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 10248524..10248671 | 272..419 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 10248721..10248858 | 420..557 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 10248132..10248244 | 9..121 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:51 has no hits.
UFO05589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:44 Download gff for
UFO05589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12914-RA | 234..1006 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:29 Download gff for
UFO05589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12914-RA | 234..1006 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:12 Download gff for
UFO05589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12914-RA | 234..1006 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:12 Download gff for
UFO05589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10248124..10248244 | 1..121 | 96 | -> | Plus |
| 2R | 10248312..10248462 | 122..272 | 100 | -> | Plus |
| 2R | 10248525..10248671 | 273..419 | 100 | -> | Plus |
| 2R | 10248721..10248858 | 420..557 | 100 | -> | Plus |
| 2R | 10248942..10249157 | 558..773 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:29 Download gff for
UFO05589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6135629..6135749 | 1..121 | 96 | -> | Plus |
| arm_2R | 6135817..6135967 | 122..272 | 100 | -> | Plus |
| arm_2R | 6136030..6136176 | 273..419 | 100 | -> | Plus |
| arm_2R | 6136226..6136363 | 420..557 | 100 | -> | Plus |
| arm_2R | 6136447..6136662 | 558..773 | 100 | == | Plus |
