UFO05590.5prime Sequence
1093 bp (974 high quality bases) assembled on 2009-07-15
> UFO05590.5prime
CAGTCGACATGCTCTACGTGATCGATCAGCGGCTGAAGGCGCAGCAGATT
GCTCAGGACAAATCGGTCCAGGTTATCCACGATGTGACTTCTGTGCTGCT
CGAACCAAAGTTTATAGACTCGCTCCTAAACGGATCGAAACACAATAGTG
CGCAGCTTTTGACCGCCGAGCATTGCAAGTTTATGCTGAACGACATTGCC
ACCTGCTCCTTGATGCGACTCGACGAGCAGTCGATGTCCAAGCTGTGGAA
TCTGATGACTATGGTCTACAAGTGGCAGCTTTTCGTTTCCCGCCATCAGC
ACCATCTGCTGGAGATTACATTTCGGCACTTGGAGGCGATCAACAGGTTG
TATCCGGATGCCAAACGGCATATGCTGATTGACTTCACGAAAAACACGCT
GCTGGACTTTTGGAATGCCAGCGGTGAGGATGCGCAGCTGTCCATCTACC
AGACGAATCGGGCCTGGCTGCAGTGCTTTAACACAAAGATATCGCTTTTG
ATTCGCATGGGCTTTCAGGCCATGGACGGTAGTTTCATCAGGGACGTGGA
TCAAGATTACTACGCGGAATACGTTGAGTCAGCCGGCGATAATATCTATG
CGAAGAGTGCCGACCAGCGGGAGCGCCAACAACGGGAGCCCAACAGCATG
GATCAGCTGGCCGCTCAGCTGAACATAAATCCGGCGCAAAGTGAGGATCT
GCAGCCCATCAACGCCCGCCAGTTCCAGCAGCAGTTCGAGCAGGCCTTCG
GCAATGTGCTTTTCAATGACACAGCGGCCAGCTCCTCTGGCTGCGAGTTT
GTACAGCTGCAGCCCACGACATCGGCATCGTCCTCGGAAAGGGTGCGACG
TCCATGTCCCGGGGAGGATCCTTGCTGACCAGACCTGCTGGACCTGTACA
GCAAATGCCTGCAGCTTTCTAGACCATTCGTTTGGCGCGGCGGCCCAGGT
AGTGTCATAATCATATCATAATCATAATTCATAATCCCACTAGCCTAGGA
GATCTGGTCATGACTAGTGCTGATCTCACATAAAAACGCCGGCGCACGAG
CGTCTGGAACAAATCGATGGAATTCTGAGTCTACTGTATCTAT
UFO05590.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| OSCP1-RA | 1186 | CG13178-RA | 115..1024 | 5..910 | 4420 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12143359..12144195 | 905..72 | 4020 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12144371..12144438 | 72..5 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:13 has no hits.
UFO05590.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:46 Download gff for
UFO05590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 1..909 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:22 Download gff for
UFO05590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13178-RA | 90..1009 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:10 Download gff for
UFO05590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| OSCP1-RA | 109..1028 | 1..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:10 Download gff for
UFO05590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12143359..12144194 | 73..905 | 99 | <- | Minus |
| 2R | 12144371..12144439 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:22 Download gff for
UFO05590.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8030864..8031699 | 73..905 | 99 | <- | Minus |
| arm_2R | 8031876..8031944 | 1..72 | 94 | | Minus |
