UFO05591.5prime Sequence
977 bp (-96 high quality bases) assembled on 2009-07-15
> UFO05591.5prime
CAGTCGACATGAACATTCTACGCATAACCAGCACAGCTGGAGATGCCAAT
GGACCTGGCGTTGGACCAAAAGCACGGACTTCAACTCGCTGGCGCTTCCG
CATTGCGTTGCGAAAAGAGGCACGCTTCGGCCAGGCGGGGCGGCAACTCA
AAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGATGCGGAATGATCGGT
GCGTGCGCAGCGGTTGGCTACTCCTATGCAAGATTCGAGGGTCCGGTGGT
GGGGCCGGAGCATCTGGTCACCGTCCACGACGGACGCACCGTGGACTATG
TGGCCCGTCCCGAGTACTGCTTCCCCTATGGAGTCGAGGATGGCAAGACG
CGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGGGGACGAGGTGAGAGG
AGTGTACAGCGTACTCCATCCGGATGGCACCTTGCGTGTGGTTAAATACA
CGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTCATTACCAATGGTGTG
AAAACTCTGCACGGCCACGGTTCCGACGGGGATGCGGGTGGCGGGTCGGT
GGACAGCCAGGTGAGGCACCATACGCCGATGCCCACAAACCGAAGGAGGA
TGATGAGGAGGAGGATGAACGGGAGCGGGAGCACCAGGGGAATGGCCAGT
GCCAAGTGCACGAGGATTACGATGAGGGAAAGGACGAGCAGGCGGAGGAC
GACGAGGAGGGTGGCGGTCACCAGCAGTACGAGGGCAGCAACGAGGAACG
ATATGTCGAGGCAGATGCTCCAGTCAGCAGAGAGTCCAGTGACTATGACT
ACCCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTTAAGTGGTC
ATATCGTAATCAAAATCATAATCATATTCCCACTAGCCTTAGGAGATCCT
GCCATGACTAGTTGCTTGATTCTCACCATTAAAAACCCCGGCGCCACCCA
ACGTTTCTGAAACAATCGAATTGAGTT
UFO05591.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13670-RA | 960 | CG13670-RA | 85..871 | 20..802 | 3595 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8320847..8321236 | 20..409 | 1875 | 98.7 | Plus |
| 3L | 28110227 | 3L | 8321792..8322191 | 407..802 | 1655 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:20 has no hits.
UFO05591.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:47 Download gff for
UFO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13670-RA | 74..874 | 9..806 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:25 Download gff for
UFO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13670-RA | 74..874 | 9..806 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:12 Download gff for
UFO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13670-RA | 74..874 | 9..806 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:12 Download gff for
UFO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8320836..8321236 | 9..409 | 97 | -> | Plus |
| 3L | 8321795..8322194 | 410..806 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:25 Download gff for
UFO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8313936..8314336 | 9..409 | 97 | -> | Plus |
| arm_3L | 8314895..8315294 | 410..806 | 95 | == | Plus |
