UFO05594.5prime Sequence
1089 bp (975 high quality bases) assembled on 2009-07-15
> UFO05594.5prime
CAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTCTCTATGCA
GAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAGGAAAACAT
TTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAGCACCAATG
CGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGGAGGAGGAA
CGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAGTACAACAA
ACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGCTTTGGAGG
AGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGAAGTCCTCT
TTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAAAGGCAGTC
GGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAAAGTAGAAA
AACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACGAAATGGAT
TTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAATCCTTGCG
GGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGCGACCAGTC
TGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAATATGAGGAA
GACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGCTGCTCCTC
TAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGAAACTATGG
AAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAACAGAGAGC
AATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGAACAATTCG
CGCCAAGTTGGAGAAGAAAGCGAGCCTGTTGATGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATATCATATCATA
TCATATCACACTAGCCTAGAGATCTGTCATGACTAGTGCTGATTCTCACC
AATAAAAAAACGCCGCGCACGAGCGTTCTGAACAATTCCAGATGAATTCT
GAGTCATACTGGATTTATCACGGAATCAAGCGAACTCGA
UFO05594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17855-RA | 1733 | CG17855-RA | 122..997 | 9..883 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9540748..9541058 | 59..369 | 1540 | 99.7 | Plus |
| 2L | 23513712 | 2L | 9541318..9541575 | 516..773 | 1290 | 100 | Plus |
| 2L | 23513712 | 2L | 9541116..9541265 | 368..517 | 750 | 100 | Plus |
| 2L | 23513712 | 2L | 9541634..9541744 | 774..883 | 505 | 99.1 | Plus |
| 2L | 23513712 | 2L | 9540644..9540698 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:12 has no hits.
UFO05594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:17 Download gff for
UFO05594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17855-RA | 1..879 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:54 Download gff for
UFO05594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17855-RA | 122..997 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:49 Download gff for
UFO05594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17855-RA | 122..997 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:49 Download gff for
UFO05594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9541118..9541263 | 370..515 | 100 | -> | Plus |
| 2L | 9541318..9541575 | 516..773 | 100 | -> | Plus |
| 2L | 9541634..9541744 | 774..883 | 99 | == | Plus |
| 2L | 9540644..9540698 | 9..63 | 100 | -> | Plus |
| 2L | 9540753..9541058 | 64..369 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:54 Download gff for
UFO05594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9541318..9541575 | 516..773 | 100 | -> | Plus |
| arm_2L | 9541634..9541744 | 774..883 | 99 | == | Plus |
| arm_2L | 9540644..9540698 | 9..63 | 100 | -> | Plus |
| arm_2L | 9540753..9541058 | 64..369 | 100 | -> | Plus |
| arm_2L | 9541118..9541263 | 370..515 | 100 | -> | Plus |
