UFO05595.5prime Sequence
1070 bp (965 high quality bases) assembled on 2009-07-15
> UFO05595.5prime
CAGTCGACATGCCGGTTTTTGATGACCACTTCCTTGGCGACTGCCATGAT
GAGCCCGAAGGACTTTTGCCGCGTTGGTGGTTCGGTGGCTTTGCCTCGAT
GTGCGTTGCCTTCGCAGTGGCGCCCATTGATATCGTGAAAACTCACATGC
AGATCCAAAGGCAAAAGCGTTCAATTTTAGGCACGGTCAAAAGAATACAC
TCTTTAAAAGGATACTTGGGCTTCTACGATGGCTTCTCGGCTGCCATCCT
GAGACAAATGACCAGCACCAATATCCATTTCATAGTGTATGATACTGGCA
AGAAAATGGAGTACGTCGATAGGGATTCATATCTGGGAAAGATTATTTTG
GGCTGCGTGGCTGGAGCTTGCGGTTCTGCGTTTGGTATACCAACGGATCT
GATTAACGTGCGGATGCAAACCGATATGAAGGAGCCGCCGTACAAGCGAC
GCAACTATAAGCATGTCTTCGATGGACTCATTCGAATTCCCAAGGAGGAG
GGCTGGAAGGCACTTTACAAAGGTGGATCGGTAGCGGTCTTCAAATCATC
GCTAAGCACTTGCAGCCAGATAGCTTTCTACGATATTATTAAAACGGAAG
TGAGGAAAAATATCTCTGTGAATGACGGATTGCCCTTGCACTTTCTCACT
TCGCTGGGTACATCGATCATTTCGTCTGCGATCACTCATCCCCTGGACGT
GGTAAGGACCATTATGATGAACTCCAGACCCGGCGAATTTCGCACAGTCT
TCCAAGCGTCTGTTCACATGATGCGCTTTGGCGTAATGGACCCTATCGAG
GATTTGTGCCAACTATAGTGCGAAAAGCACCGGCCACCACTTTGCTATTT
GTTTTGTACGAGCAACTGAGCTCCATTTCGGAATTTGCTCCCTGGGGAGG
GGGAGAAGTACATGCAGCTTTCTAGACCATTCGTTGGCGCGCGGGCCAGG
TAGTGGTCATATCATATCATATCATATCATATCCCACTAGGCCTAAGAAG
ATCTGGTCATGACTAGTGCTTGGATTCTCAACAATAAAACGGCGGCGCAC
GGCGGTCTGAACATCAAATG
UFO05595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic4-RC | 1811 | CG18363-RC | 142..1045 | 9..912 | 4430 | 99.6 | Plus |
| Dic4-RA | 1144 | CG18363-RA | 142..1045 | 9..912 | 4430 | 99.6 | Plus |
| Dic4-RB | 1140 | CG18363-RB | 142..1041 | 9..912 | 4360 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18697182..18697492 | 896..588 | 1455 | 99.4 | Minus |
| 3L | 28110227 | 3L | 18697760..18698009 | 458..209 | 1235 | 99.6 | Minus |
| 3L | 28110227 | 3L | 18698069..18698271 | 211..9 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 18697567..18697699 | 587..455 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:08:16 has no hits.
UFO05595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:20 Download gff for
UFO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18363-RA | 137..1051 | 1..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:30 Download gff for
UFO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic4-RA | 137..1051 | 1..917 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:44 Download gff for
UFO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic4-RA | 137..1051 | 1..917 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:44 Download gff for
UFO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18697156..18697492 | 588..918 | 96 | <- | Minus |
| 3L | 18697567..18697699 | 455..587 | 100 | <- | Minus |
| 3L | 18697764..18698007 | 211..454 | 100 | <- | Minus |
| 3L | 18698070..18698275 | 1..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:30 Download gff for
UFO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18690256..18690592 | 588..918 | 96 | <- | Minus |
| arm_3L | 18690667..18690799 | 455..587 | 100 | <- | Minus |
| arm_3L | 18690864..18691107 | 211..454 | 100 | <- | Minus |
| arm_3L | 18691170..18691375 | 1..210 | 98 | | Minus |
