UFO05601.5prime Sequence
1001 bp (852 high quality bases) assembled on 2009-07-15
> UFO05601.5prime
CAGTCGACATGACAGAGAATCAGCTGTATCCCATGTCATCGGAGTTCTTT
GACACCGGCTCGAACAGCAGCAGCAACACACTTAAATACGATCTGTATTC
CCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGTTGACGATCAACA
CGGGCTACGGCAGCAGCAGCAGCAACAATAACAACACTAATAACAACAAT
AACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCACCAGCACCAC
AAATACCTGTAATGTAATGCTAAGTACAACGGCCATAACAATACCACGCA
GCAGCAACCACAACCAGATCCATCATCATCCGTATCAGCAGTCCGATTTG
CAGACACCGCGCCATCATCCCAGTCCTCTACACACGTTGCCCAGCATGAC
CCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAGCAACACCACAACC
AACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGCTTTCAGAC
TTTGGACTAGATGCACTGGATGCCGCTTCGCTATCGCCCACTCTGCTGCA
GGATGTGAGCCTGAGTGCTGTTTCTCCTCTAAGCACCACACTCTACAATG
GCAACACCAGTGGAGCACGCAGCAGCAACGGAATAGGATCCGGCAGTGGT
GGCTACTTCACGCCCGACATGTCGCACAGCCTCAGCCTGAATGTGGTCAG
TGAGCAGGTTCTGCTGCATGAAGCCACAACCCCGAATGAGTTGCTCTACG
AGATGACACCCAACTCGAATGCCATGTGGAGTGATATCAGCAGTGCCATT
ATCCATACCAAACACGAGCATTCAGTCTGGACGATGACTATATCTTTCCC
AAACGATAAGCGAAAATACAGCAGCCGATTTGTCTGACCTTAATGGCGGC
GATTTTTCTGGATGTGATCGAAATATAGAGGATTTCTTGGCCGCAGAACG
CAATCACTCATGTGTCAATTTCCTACTGTCGCCGCAAGCTCAAGATCTGG
A
UFO05601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13624-RG | 3698 | CG13624-RG | 776..1763 | 9..994 | 4650 | 98.5 | Plus |
CG13624-RF | 3805 | CG13624-RF | 433..1420 | 9..994 | 4650 | 98.5 | Plus |
CG13624-RE | 3680 | CG13624-RE | 308..1295 | 9..994 | 4650 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24561855..24562842 | 994..9 | 4455 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-28 20:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2671 | 144..475 | 377 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7179 | 148..617 | 343 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..7086 | 161..469 | 334 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2641 | 161..469 | 330 | 60.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..7004 | 180..462 | 255 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2543 | 182..446 | 236 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6952 | 201..437 | 234 | 58.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1160 | 210..320 | 152 | 63.2 | Plus |
UFO05601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:53 Download gff for
UFO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RA | 429..1422 | 9..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:48 Download gff for
UFO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RC | 1306..2299 | 9..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:57 Download gff for
UFO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RE | 308..1301 | 9..1000 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:57 Download gff for
UFO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24561849..24562842 | 9..1000 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:48 Download gff for
UFO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20387571..20388564 | 9..1000 | 98 | | Minus |