UFO05604.5prime Sequence
960 bp (832 high quality bases) assembled on 2009-07-15
> UFO05604.5prime
CAGTCGACATGTGGAATTCCGAACCAACACATCGCCAGCACCATCAGCAC
AATGGAAATTCTACCTCGGGCGGACCGCCCGCCAAGCAATTGGGCATGAC
CTCGGCTATCAGTCTGGCCGAGCCACGGCCTGAGGATCTCCAGCGCACTG
ATGAGCTCCGCGGCTCACTGGAGCCGTACAACGTCTTTGAGAGCCAGGAC
GAGCTAAATCACCGTATGGAGATCCTGGCCAAGCTCAACACACTGGTCAA
GCAGTGGGTCAAGGAAATCTCTGTCAGCAAGAACATGCCAGAGTCAGCCG
CCGAGAAGCTTGGCGGCAAGATCTACACATTCGGCTCGTATCGATTGGGT
GTCCATCACAAGGGTGCCGATATAGATGCCTTATGTGTTGCTCCGCGAAA
TATTGAGCGCACCGACTACTTTCAGAGCTTCTTTGAGGTGCTCAAGAAGC
AGCCAGAGGTAACCGAGTGCCGCTCGGTGGAAGAGGCCTTTGTGCCCGTC
ATCAAAATGAACTTTGATGGCATCGAAATTGATTTGCTGTTTGCCCGTCT
GTCCCTAAAAGAAATTCCTGATGACTTTGATCTACGGGATGATAACTTAC
TGCGGAATCTGGATCACCGTTCGGTGCGCAGCCTCAACGGCTGTCGTGTG
ACGGACGAGATCCTGGCCCTGGTGCCCAATATTGAAAATTTCCGCCTGGC
ACTGCGCACTATCAAATTGTGGGCAAAGAAGCACGGAATCTACTCAAATT
CATTGGTTATTTCGGTGGTGTGACCTGGGCATGTTAGTGGCAGACTGTCA
GCTGTATCCCACGCTGCGCTGCCACACTGGTGCACAGTTTTTTCTTGGTC
TTTTCGCGCTGGAGTGGCTACCCATGCTACCTCAGCACCCGACACGTATC
TAGATTTCAGTCTGGATCCGCGGTGTCATGCCTCGATCGTTCATTTGATG
CATTATTACG
UFO05604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 877..1853 | 7..960 | 4205 | 96.9 | Plus |
| hrg-RB | 3607 | CG9854-RB | 441..1417 | 7..960 | 4205 | 96.9 | Plus |
| hrg-RA | 3914 | CG9854-RA | 748..1724 | 7..960 | 4205 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19667528..19668250 | 729..7 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 19667324..19667464 | 863..730 | 365 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:53 has no hits.
UFO05604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:55 Download gff for
UFO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 427..1320 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:36 Download gff for
UFO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 742..1635 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:48 Download gff for
UFO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 742..1635 | 1..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:48 Download gff for
UFO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19667300..19667464 | 730..884 | 91 | <- | Minus |
| 2R | 19667528..19668256 | 1..729 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:36 Download gff for
UFO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15554805..15554969 | 730..884 | 91 | <- | Minus |
| arm_2R | 15555033..15555761 | 1..729 | 99 | | Minus |
