UFO05605.5prime Sequence
1100 bp (982 high quality bases) assembled on 2009-07-15
> UFO05605.5prime
CAGTCGACATGATATGCCGACTCTGCCTGGAGGATGCTGAGCACGGGGTG
CCCATTTTCGGCCAGGAACCGCCAATGGGACAACCGGCACATCGCCAGCT
GGCCGAGCTGATCGAGCGACATCTGCTGCTGGTGTTGGCGGAAAACGACG
TGGTGTCCACGTGCCTGTGCAACCGCTGCTGGCGGCAGCTGGCCGAGATC
GAGCAATTCTGTTCCATGGTAGCGGAGAAGCAGCGGTCGCTGCACCGCTC
CTTGCAGCTGAAAACTGAATTGCCGGAGCTGCCCGAACTGACGGAGCCGG
AGCCCGCCCTGGTCGTGTGGAACACGGAGTCGCCAATCGAGCCAAAGCTC
AGCTATGAGGGCGATGACATCAAGGATCACATACTGTGCGAACCCGTCAT
CGACGCCTTGTCCGCGGGCGATGAAAAAGACAGTGACTATGGCGACACCT
TTGAACCGGACTTCGAGCCGGAATCGCAGCCAGATGAAGAAGAAGAACCG
GAGCCGGATCCGGTAAAACCGCGCCCCAGGGGCAGGCCGCGCAAAACTGC
GCTGCAGCAAACGCATCAAATCATCAAAAGGAAGTACGAGAAGCGCAAAC
AGCAGAACAAGGCCAAGATCACAGAGTTATCATTACGGGAATCAAGAGCC
CGGCAAAGGGAACTTAAACGCAGCAGTGCTGGAGCAGAGGATGATCAGGA
TGGCGACGAAGACGAGGAGGACGAAGAAGATGTCGGGGGCGAGCTAACAC
CAGATGCCGACGAACAGCCAAAGCCGCGCGGCAAACGTGGCCGACCCAAG
ACCAAGAAACTGGTAACCGCCGACGATAATGATGATACCTCGGAGGTGCC
CGTCAAGCGCAGCAGCATCAAGGAATGGACGACTATATAGCCGCCATGTT
AGCTCGACTGCGCATTTGCGCCGCCCCGCTGGAGACTTCACGATCTCAGC
GCCACTTTCGCGTGAGCACGACTGCACTGGCTATGTGGAGTGCTGCAACA
TCGGTACAAGAAGGGAACCTGTACGTCGACATTTGCCCTGCCCCAAGATC
CGCAGTACTTACTGCGAGCTGCCGGCAAAGAACTCTACCGCACAGCAGGT
UFO05605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-RA | 2235 | CG11696-RA | 128..1191 | 9..1060 | 4945 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11574052..11574990 | 134..1060 | 4020 | 98.2 | Plus |
| X | 23542271 | X | 11573858..11573983 | 9..134 | 630 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 557..667 | 703..810 | 150 | 64.3 | Plus |
UFO05605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:56 Download gff for
UFO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 52..1142 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:03 Download gff for
UFO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 122..1212 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:57 Download gff for
UFO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 122..1212 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:57 Download gff for
UFO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11573852..11573983 | 1..134 | 97 | -> | Plus |
| X | 11574053..11575011 | 135..1078 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:03 Download gff for
UFO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11467885..11468016 | 1..134 | 97 | -> | Plus |
| arm_X | 11468086..11469044 | 135..1078 | 97 | | Plus |
