UFO05606.5prime Sequence
1037 bp (916 high quality bases) assembled on 2009-07-15
> UFO05606.5prime
CAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGAACAACCAC
CAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAACGAGACTCT
AGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGCCCACAAGG
TGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTACAAGAACAG
TACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTACCAAGAGCT
GCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATATCTCGCAGG
ATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGATCAAGGGC
CTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCAGAGTCCTC
CGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACTGGAGCAAA
CTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGTCTGGCGAT
GTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGTCGCCGAAA
AGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTCAAACTCGT
CCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGCAGACAGGG
GCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCCAGCGGACC
GGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACAGCAGCCAT
TGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAACTAACATCC
TCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCTGTACACAG
GCCCATCTGCATCAGCAGCAGCGCAGACCACAGCGATGCCATTACACCGA
GATGTACAGCCCAGAGCCAGTGCGCCCAGCGTCCAAGGCGATGACGAGAC
TGATGAGGTATGCGTGGCGACAACTCGGCACGACCATCCGCCTCCGCCTT
GCATCGCGTCATGGCGGGAGTGTTGTAAGGCAGTGCC
UFO05606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RAA | 4623 | CG12052-RA | 607..1557 | 9..948 | 4500 | 98.8 | Plus |
| lola-RZ | 2707 | CG12052-RZ | 403..1353 | 9..948 | 4500 | 98.8 | Plus |
| lola-RB | 2974 | CG12052-RB | 397..1347 | 9..948 | 4500 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10533118..10533511 | 576..183 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 10532574..10532895 | 894..576 | 1460 | 99.1 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 182..9 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:33 has no hits.
UFO05606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:58 Download gff for
UFO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RI | 396..1350 | 1..948 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:07 Download gff for
UFO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1347 | 1..948 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:02 Download gff for
UFO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1347 | 1..948 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:02 Download gff for
UFO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10532512..10532894 | 577..948 | 97 | <- | Minus |
| 2R | 10533118..10533511 | 183..576 | 100 | <- | Minus |
| 2R | 10533576..10533753 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:07 Download gff for
UFO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6420017..6420399 | 577..948 | 97 | <- | Minus |
| arm_2R | 6420623..6421016 | 183..576 | 100 | <- | Minus |
| arm_2R | 6421081..6421258 | 1..182 | 97 | | Minus |
