UFO05607.5prime Sequence
1083 bp (997 high quality bases) assembled on 2009-07-15
> UFO05607.5prime
CAGTCGACATGTCGGCGGCCGCTTGCCTACTGTCTTCTTCTACTTCTTCG
TTCGAGAAGACCTGCCGCATCTGCCACAAGGCCTTCGCGAACGTCTACCG
CCTGCAGAGGCACATGATCAGCCACGACGAGAGTGCGCTGCTGCGGAAGT
TTAAGTGCAAGGAGTGCGACAAGGCCTTCAAGTTCAAGCACCACCTCAAG
GAGCACGTGAGGATCCATTCCGGCGAGAAGCCCTTCGGATGCGACAACTG
CGGCAAGCGATTCTCGCACTCGGGCAGCTTCTCCTCCCACATGACCTCCA
AGAAGTGCATCAGCATGGGCCTCAAGCTGAACAACAATCGCGCTCTGCTG
AAGCGACTGGAGAAGAGCCCGGGATCCGCATCCTCCGCATCCCGGCGATC
GCCCTCCGATCACGGAAAGGGCAAGCTGCCGGAGCAGCCGTCGCTACCGG
GACTACCACATCCGATGAGCTACTTCGCCAGCGATGCGCAGGTGCAAGGT
GGAAGTGCGGCACCCGCGCCCTTCCCGCCATTCCATCCGAACTACATGAA
CGCGGCCCTGCTCGCCTTTCCCCACAACTTTATGGCGGCTGCAGCTGGCC
TGGATCCTCGGGTGCATCCCTACAGCATCCAGAGGCTGCTGCAACTTTCC
GCCGCCGGTCAGCAGCAGAGGGAGGAGGAGCGTGAGGAGCAGCAAAAGCA
GCAGCAGCATGATGAGGAGGAGACCCCCGATGAGCCCAAGCTAGTGATGG
ATATCGAGGAGCCAGAGACCAAGGAGATGGCACCCACGCCAGAGGCCACC
GAAGCAGCCACTCCCATTAAGCGGGAGGAGAGCAGGAAGCCTCTCCCGAT
CCAGAGAGCTACCGTTCCTCCTCGCAGCAATCAAACAGGAGCAGGAGCCC
CTGACGTAGCAGAGGAACGTCAAACTCCTGTGGAGACACGCCCCCGTGAG
CATGCCGCTGATCTGGCGCTGCAGTCGCTGCTCCAGCAGTCATCATCCCA
CTGAGCTGGTGCAGCACGAGAAAGGTGCTTTTGTACTGATCAGGAGGGAC
TTGGAGCAGACTCAACAAGCAAAGGCCAGTCTG
UFO05607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zfh1-RA | 3560 | CG1322-RA | 343..1401 | 9..1059 | 4885 | 98.2 | Plus |
| zfh1-RB | 6522 | CG1322-RB | 1329..2338 | 58..1059 | 4640 | 98.1 | Plus |
| zfh1-RE | 6522 | CG1322-RE | 1329..2338 | 58..1059 | 4640 | 98.1 | Plus |
| zfh1-RA | 3560 | CG1322-RA | 2425..2533 | 171..279 | 200 | 80 | Plus |
| zfh1-RB | 6522 | CG1322-RB | 3362..3470 | 171..279 | 200 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30783941..30784913 | 58..1022 | 4395 | 98.7 | Plus |
| 3R | 32079331 | 3R | 30783600..30783650 | 9..59 | 255 | 100 | Plus |
| 3R | 32079331 | 3R | 30786042..30786150 | 171..279 | 200 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:21 has no hits.
UFO05607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:29:59 Download gff for
UFO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zfh1-RA | 335..1390 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:39 Download gff for
UFO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zfh1-RA | 335..1390 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:36 Download gff for
UFO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zfh1-RA | 335..1390 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:36 Download gff for
UFO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30783592..30783650 | 1..59 | 93 | -> | Plus |
| 3R | 30783943..30784952 | 60..1058 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:39 Download gff for
UFO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26609314..26609372 | 1..59 | 93 | -> | Plus |
| arm_3R | 26609665..26610674 | 60..1058 | 97 | <- | Plus |
