UFO05608.5prime Sequence
937 bp (824 high quality bases) assembled on 2009-07-15
> UFO05608.5prime
CAGTCGACATGTCGGGCGGACGTGATAGCAGTACCAGTAGCGGGAGCAAT
TCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCATCCGCATC
CGCCTCCTCCACATCCACATCCGCATCCCCTGGAAGTACAACATCGCCCG
CGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCACATGCACC
TGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCCACGCAGAC
CGGCAAGAAGGAGTTCTGCTCGGAAACATGCATTGCCGAGTTCCGCAAGG
CGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCCGCGATGGG
GCGCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAGCACCAGAA
GAAGAACTGCTCGACCAGGCACAGCGGCGGATCGGCATCGGGCAAGGGTC
TGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCGCACCAACG
GGGCCCTTTCAATACGAGAGCTTCCACGTCTTCGACTGGGATGCCTATCT
AGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAAACAGGCTC
AGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGGAGGCTTTG
GATCCGCGCAACGTCACTTCCACCTGCATTGCCACCGTGGTCGGAGTGCT
TGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCAGATGACTT
TTGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGACACTGTGAAA
AGACGGTGGCATGCTGCAGCCGCCTCTGGGATCGCATGACGCATCAGCTG
CCGCTTTCTGTGCAGATCTCACATGCATGGTGGCCCGGAAGATCTCAGCG
ACCGCGAGCAGAAAACTGTCAGTGGCGAACTCAAGCT
UFO05608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scm-RB | 3767 | CG9495-RB | 456..1355 | 8..892 | 4115 | 98.1 | Plus |
| Scm-RA | 4069 | CG9495-RA | 456..1355 | 8..892 | 4115 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9636609..9637156 | 555..8 | 2740 | 100 | Minus |
| 3R | 32079331 | 3R | 9636272..9636553 | 832..553 | 1310 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:32:17 has no hits.
UFO05608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:26:50 Download gff for
UFO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 452..1300 | 8..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:17 Download gff for
UFO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 452..1300 | 8..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:40 Download gff for
UFO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scm-RA | 456..1304 | 8..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:40 Download gff for
UFO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9636250..9636551 | 555..850 | 98 | <- | Minus |
| 3R | 9636610..9637156 | 8..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:17 Download gff for
UFO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5461972..5462273 | 555..850 | 98 | <- | Minus |
| arm_3R | 5462332..5462878 | 8..554 | 100 | | Minus |
